Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013626.1 Corchorus capsularis cultivar CVL-1 contig13647, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74499

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--231
51
4.4
51
79
4
234
39
17
6
36
1.75
2872--2928
13
4.2
13
70
12
51
54
15
7
22
1.65
3028--3097
27
2.5
28
86
6
90
48
21
14
15
1.80
6521--6573
21
2.5
21
72
6
54
28
30
9
32
1.88
8997--9024
6
4.7
6
100
0
56
64
0
35
0
0.94
20733--20820
29
2.9
29
80
9
106
19
17
13
50
1.79
28493--28527
2
17.5
2
100
0
70
51
0
0
48
1.00
28618--28677
31
1.9
31
83
6
77
30
10
0
60
1.30
28692--28989
151
2.0
151
91
2
492
34
8
4
51
1.54
30560--30592
17
1.9
17
100
0
66
30
36
6
27
1.81
31849--32147
138
2.2
135
84
3
377
27
26
27
19
1.99
38898--38947
24
2.2
24
89
7
77
30
14
12
44
1.81
41723--41781
26
2.3
26
84
0
82
16
11
20
50
1.76
42288--42351
19
3.2
21
66
25
57
48
6
15
29
1.70
42273--42632
38
9.3
38
87
4
449
50
6
15
28
1.67
42308--42373
22
3.3
22
66
24
63
50
4
15
30
1.64
42289--42632
155
2.2
154
95
1
625
50
6
15
28
1.68
42755--42853
7
14.0
7
68
14
51
55
2
23
19
1.53
42732--42829
50
2.0
50
85
4
135
55
3
21
20
1.57
42732--42851
50
2.4
50
82
8
129
55
2
22
19
1.54
42775--42901
35
3.6
35
84
3
148
55
3
24
17
1.57
42891--42946
15
3.8
15
77
13
71
60
5
14
19
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42899--42981
29
3.1
28
78
20
104
60
3
15
20
1.50
42917--43082
22
7.6
22
71
16
114
55
4
17
22
1.61
42891--43261
44
8.8
44
76
16
286
53
5
19
21
1.64
42957--43261
122
2.5
122
92
2
506
52
5
20
22
1.66
43079--43261
21
8.9
21
72
16
134
51
4
21
21
1.67
43156--43234
35
2.2
37
88
6
126
51
3
22
21
1.63
42952--43197
22
11.7
21
74
12
152
52
5
19
22
1.67
43308--43354
13
3.5
13
72
16
51
61
0
25
12
1.31
43299--43357
27
2.1
27
90
3
91
59
1
22
16
1.46
48648--48782
36
3.7
36
90
5
225
58
14
9
17
1.62
57024--57050
1
27.0
1
100
0
54
0
0
0
100
0.00
57000--57035
17
2.2
17
90
5
56
0
16
8
75
1.04
57374--57426
26
2.0
26
96
0
97
33
20
9
35
1.85
59816--59869
27
2.0
27
92
0
90
50
16
16
16
1.79
72707--73002
109
2.7
109
91
4
450
50
1
10
37
1.48

Tables:   1

The End!