Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013627.1 Corchorus capsularis cultivar CVL-1 contig13648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95513

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2947--2976
15
2.0
15
100
0
60
40
0
6
53
1.27
5557--5595
20
1.9
21
84
5
53
56
2
17
23
1.53
9364--9401
18
2.1
18
90
0
58
23
13
23
39
1.90
10249--10322
30
2.4
31
84
2
87
33
17
16
32
1.92
13754--13784
14
2.2
14
94
0
53
51
16
16
16
1.77
15699--15726
13
2.2
13
100
0
56
85
14
0
0
0.59
18238--18468
22
10.6
22
74
11
163
42
15
10
32
1.80
18258--18832
44
13.0
44
68
14
195
37
15
10
36
1.82
18238--18470
67
3.6
66
75
10
176
42
15
10
32
1.81
18506--18564
22
2.7
22
86
0
82
32
22
5
40
1.75
18609--18832
22
10.2
22
73
8
152
35
13
10
40
1.78
18675--18825
66
2.3
67
80
7
175
34
12
13
39
1.82
21516--21601
25
3.3
25
63
15
66
18
16
10
54
1.69
22164--22213
22
2.3
22
93
3
84
20
20
18
42
1.90
22164--22223
22
2.8
22
87
7
79
21
18
16
43
1.88
25922--26091
91
1.9
91
93
0
295
34
4
25
34
1.77
26192--26264
29
2.5
29
84
6
94
41
17
19
21
1.91
27947--28004
30
2.0
30
93
3
100
18
29
13
37
1.90
28076--28151
32
2.4
32
86
0
107
21
26
26
26
1.99
28197--28267
30
2.5
28
83
4
97
42
15
22
19
1.89
29058--29155
50
1.9
51
85
4
135
33
17
14
34
1.90
35272--35304
16
2.1
16
100
0
66
30
27
18
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36691--36855
83
2.0
83
89
4
253
27
17
18
36
1.93
41453--41495
6
7.3
6
92
2
70
51
16
0
32
1.45
42829--42887
19
2.9
21
73
21
61
37
18
1
42
1.61
42857--42888
11
2.9
11
90
0
55
43
18
0
37
1.51
42829--42888
22
2.9
22
76
19
65
38
18
1
41
1.60
43043--43081
20
2.0
20
84
0
51
66
10
7
15
1.43
46555--46624
36
1.9
37
85
2
97
21
14
20
44
1.86
53051--53112
21
3.0
21
76
9
72
30
9
22
37
1.86
60688--60721
16
2.2
16
89
5
52
58
8
2
29
1.43
61962--61997
19
1.9
18
88
5
54
33
22
2
41
1.68
64291--64525
115
2.0
115
100
0
470
34
18
16
30
1.93
70643--70676
16
2.2
16
89
5
52
58
8
2
29
1.43
71812--71847
18
2.0
18
100
0
72
33
11
11
44
1.75
73331--73357
2
13.5
2
100
0
54
51
0
0
48
1.00
78290--78321
11
2.9
11
90
0
55
37
0
18
43
1.51
79719--79754
15
2.4
15
95
0
63
16
8
5
69
1.33
81101--81143
15
2.9
15
92
0
68
39
23
27
9
1.85
83065--83102
19
2.1
19
85
5
51
44
7
7
39
1.63
85347--85377
6
5.3
6
96
3
55
35
0
12
51
1.40
85395--85430
15
2.4
15
100
0
72
16
5
5
72
1.23
85948--85987
21
1.9
21
94
0
71
12
20
10
57
1.63
91193--91262
24
3.0
24
78
19
78
47
15
12
24
1.81

Tables:   1

The End!