Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013633.1 Corchorus capsularis cultivar CVL-1 contig13654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13795
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:2227 original size:11 final size:11

Alignment explanation


    Indices: 2211--2246  Score: 63
    Period size: 11  Copynumber: 3.3  Consensus size: 11

       2201 TTGAAAGAAC

                       
       2211 TATTAATTAGA
          1 TATTAATTAGA

                      *
       2222 TATTAATTAGT
          1 TATTAATTAGA

                       
       2233 TATTAATTAGA
          1 TATTAATTAGA

               
       2244 TAT
          1 TAT

       2247 AATATAATGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (11 bp):   
TATTAATTAGA

Found at i:5434 original size:19 final size:18

Alignment explanation


    Indices: 5401--5436  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       5391 TTGAAATAAT

                              
       5401 TCTTCAATAATCTTCAAA
          1 TCTTCAATAATCTTCAAA

                     *        
       5419 TCTTCAAATTATCTTCAA
          1 TCTTC-AATAATCTTCAA

       5437 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42


Consensus pattern (18 bp):   
TCTTCAATAATCTTCAAA
Done.