Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013637.1 Corchorus capsularis cultivar CVL-1 contig13658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53815

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1798
328
5.4
330
81
5
2177
31
16
16
34
1.92
5--1800
658
2.7
661
92
2
2898
31
16
16
34
1.92
2858--3023
86
1.9
87
93
1
289
30
32
27
9
1.89
13620--13832
107
2.0
106
94
2
374
29
16
18
35
1.93
13868--14421
239
2.3
235
96
2
1045
21
16
20
41
1.90
15885--15922
20
1.9
20
84
10
51
52
2
0
44
1.14
18077--18119
18
2.4
18
80
0
50
34
37
2
25
1.69
18870--18898
14
2.0
15
93
6
51
27
13
6
51
1.66
20783--20819
19
1.9
19
100
0
74
43
29
10
16
1.82
21904--21958
17
3.2
17
82
10
67
21
21
21
34
1.97
22604--22631
13
2.2
13
100
0
56
53
0
0
46
1.00
23960--24016
27
2.1
27
93
0
96
33
21
17
28
1.96
36115--36268
69
2.2
70
88
3
222
37
12
0
50
1.45
39172--39218
15
3.1
15
75
0
58
29
2
10
57
1.44
43714--43748
10
3.6
10
88
3
54
37
17
2
42
1.64
44688--44748
28
2.2
28
90
0
95
39
8
18
34
1.80
53273--53332
31
1.9
31
86
0
84
28
25
15
31
1.95
53637--53663
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!