Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013638.1 Corchorus capsularis cultivar CVL-1 contig13659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146201

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18689--18713
2
12.5
2
100
0
50
0
52
0
48
1.00
27514--27560
19
2.6
18
86
3
58
40
27
17
14
1.89
39540--39564
12
2.1
12
100
0
50
52
40
0
8
1.31
40035--40065
15
2.1
15
100
0
62
48
12
12
25
1.77
40196--40238
20
2.2
20
91
8
70
39
23
16
20
1.92
40339--40367
15
1.9
15
100
0
58
48
10
13
27
1.75
41471--41514
21
2.1
20
83
8
52
56
6
2
34
1.38
43779--43806
1
28.0
1
100
0
56
100
0
0
0
0.00
47762--47996
61
3.9
61
87
2
355
35
23
15
25
1.94
47761--47997
122
1.9
122
93
0
402
35
23
15
25
1.94
49031--49119
44
2.1
40
82
12
99
48
1
22
28
1.58
49358--49389
3
10.7
3
100
0
64
0
34
0
65
0.93
59255--59491
95
2.4
98
86
8
318
27
21
16
34
1.94
64757--64782
2
13.0
2
100
0
52
50
0
0
50
1.00
66711--66747
17
2.2
17
100
0
74
45
5
24
24
1.74
67263--67293
7
4.4
7
91
0
53
41
3
41
12
1.59
83289--83320
16
1.9
17
93
6
57
53
0
6
40
1.26
87064--87301
118
2.0
118
97
0
449
39
10
13
35
1.80
92024--92049
13
2.0
13
100
0
52
53
15
7
23
1.67
93676--93710
17
2.0
18
88
5
54
28
8
0
62
1.24
97630--98111
166
2.9
163
81
6
567
37
15
15
30
1.89
98140--98172
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102676--102729
29
2.0
24
83
16
63
29
0
12
57
1.36
105101--105216
57
2.0
57
96
0
214
42
16
6
34
1.75
105956--105989
17
2.1
17
94
5
61
11
11
26
50
1.73
108412--108453
22
1.9
22
85
0
57
52
0
0
47
1.00
108424--108459
19
1.9
18
88
5
54
47
0
0
52
1.00
108415--108463
9
5.3
9
82
4
53
48
0
0
51
1.00
117261--117356
49
2.0
49
89
0
147
31
17
4
46
1.67
117453--117944
265
1.9
265
91
0
815
27
26
15
30
1.96
118559--118613
27
2.0
27
89
0
83
41
5
21
30
1.76
118570--118624
27
2.0
27
85
0
74
50
5
18
25
1.67
120635--120679
2
23.5
2
86
8
67
51
2
0
46
1.13
123032--123067
16
2.2
16
95
0
63
27
11
11
50
1.72
124082--124107
2
13.0
2
100
0
52
50
0
0
50
1.00
133213--133712
249
2.0
249
100
0
1000
28
17
9
44
1.81

Tables:   1

The End!