Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013644.1 Corchorus capsularis cultivar CVL-1 contig13665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26548

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
518--742
70
3.1
70
88
5
306
49
0
12
37
1.44
598--742
78
1.9
78
92
0
245
50
0
11
37
1.39
838--871
6
5.5
6
96
3
59
50
0
14
35
1.44
1209--1274
31
2.1
32
85
2
89
21
9
25
43
1.81
2243--2267
2
12.5
2
100
0
50
52
0
0
48
1.00
2317--2356
3
13.3
3
100
0
80
0
32
0
67
0.91
8629--8653
6
4.2
6
100
0
50
64
0
16
20
1.30
15908--15960
24
2.2
24
100
0
106
60
20
11
7
1.55
15900--15963
24
2.4
28
75
24
84
59
21
10
7
1.56
19448--19499
22
2.4
22
83
6
61
36
13
13
36
1.84
19589--19873
22
13.1
22
69
13
90
35
14
9
40
1.80
19641--19725
23
3.7
23
82
3
100
37
12
7
42
1.71
19602--19725
45
2.8
44
77
10
126
37
12
8
40
1.75
19600--19899
66
4.6
65
71
12
179
34
14
10
41
1.80
19771--19893
44
2.8
42
77
11
115
34
12
12
40
1.80
19791--19894
22
4.7
22
72
11
72
36
11
12
39
1.79
19882--19929
19
2.5
20
86
6
71
29
16
8
45
1.76
20013--20250
22
10.8
22
73
9
146
33
13
10
42
1.79
20290--20345
22
2.7
20
74
17
51
37
17
5
39
1.73
20305--20355
22
2.3
22
82
0
66
41
19
7
31
1.80
20457--20523
26
2.7
26
76
4
75
38
22
7
31
1.82
20649--20691
19
2.2
20
84
16
54
62
2
6
27
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20992--21062
31
2.3
31
88
9
101
46
4
19
29
1.69
21803--21863
3
20.3
3
96
0
113
0
34
0
65
0.93

Tables:   1

The End!