Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013647.1 Corchorus capsularis cultivar CVL-1 contig13668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43704

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3780--3844
32
2.0
32
100
0
130
33
24
12
29
1.92
4203--4341
70
2.0
71
94
1
244
33
5
15
46
1.69
4593--4625
13
2.5
13
86
13
50
60
9
3
27
1.42
6538--6659
60
2.0
60
87
4
176
50
18
6
23
1.70
7706--7745
20
2.0
21
85
5
55
52
0
0
47
1.00
8473--8510
3
12.7
3
89
10
60
68
0
0
31
0.90
13693--13743
23
2.2
23
92
0
84
27
31
17
23
1.97
13764--13919
77
2.0
77
100
0
312
36
15
17
30
1.91
15350--15389
16
2.5
16
88
8
55
80
5
15
0
0.88
32169--32193
13
1.9
13
100
0
50
24
8
20
48
1.76
36274--37103
417
2.0
418
95
0
1500
30
12
18
38
1.88
41868--42019
32
4.8
32
97
1
288
30
6
28
34
1.83
41868--42019
63
2.4
63
97
2
286
30
6
28
34
1.83
42875--43299
228
1.9
228
85
3
588
30
16
13
39
1.87

Tables:   1

The End!