Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013652.1 Corchorus capsularis cultivar CVL-1 contig13673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106556

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--340
99
2.0
99
98
0
382
33
12
22
32
1.91
692--995
125
2.4
125
82
2
369
33
14
12
38
1.84
24331--24386
24
2.3
24
93
0
94
32
16
16
35
1.90
24619--24751
66
2.0
66
95
0
239
33
17
23
25
1.96
28508--28708
71
2.8
71
99
0
393
46
22
6
24
1.76
36347--36381
13
2.7
13
100
0
70
65
0
25
8
1.21
42947--43099
72
2.1
72
80
7
168
33
11
27
27
1.92
51860--52022
87
1.9
87
89
0
254
30
11
26
31
1.91
51870--52050
87
2.1
88
82
9
228
29
12
28
29
1.93
56037--56082
22
2.1
22
100
0
92
58
4
23
13
1.52
71958--71989
15
2.1
16
88
11
50
0
12
0
87
0.54
72775--72835
31
1.9
32
83
9
81
27
11
16
44
1.82
77756--77916
87
1.9
87
86
0
232
30
8
27
32
1.87
92132--92158
2
13.5
2
100
0
54
0
48
0
51
1.00
101295--101319
9
2.8
9
100
0
50
60
0
40
0
0.97
101910--102246
56
6.0
56
80
3
329
34
13
18
34
1.89
101913--102244
112
2.9
112
81
4
373
34
12
18
34
1.89

Tables:   1

The End!