Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013657.1 Corchorus capsularis cultivar CVL-1 contig13678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19254

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432--903
238
2.0
231
88
5
689
34
14
17
33
1.90
895--1254
195
1.9
194
85
3
501
36
12
15
35
1.85
1071--1882
322
2.5
320
85
3
1022
34
14
16
33
1.90
663--2413
837
2.1
834
87
2
2508
34
13
16
34
1.89
2213--2604
195
2.0
194
81
4
463
35
13
15
35
1.86
1378--2924
514
3.0
507
85
4
1983
34
14
16
34
1.89
2410--3247
323
2.6
320
84
4
1032
33
13
17
35
1.89
1896--3441
834
1.9
832
86
2
2246
33
13
17
35
1.89
3057--3720
194
3.4
193
87
3
940
33
12
16
36
1.87
3721--5042
320
4.2
319
84
5
1677
32
14
17
35
1.90
3721--5042
627
2.1
631
85
3
1806
32
14
17
35
1.90
4523--5555
516
2.0
513
91
1
1665
34
14
16
34
1.90
5039--6513
319
4.6
319
83
3
1697
33
14
16
35
1.89
6526--6551
2
13.0
2
100
0
52
50
0
0
50
1.00
18367--18439
36
2.0
36
94
0
128
52
2
4
41
1.35
18392--18424
13
2.4
14
90
5
50
57
0
3
39
1.14
18358--18441
36
2.2
37
87
8
125
51
2
3
42
1.32
18369--18417
13
4.1
12
74
10
55
55
2
2
40
1.23
18604--18635
13
2.5
13
95
5
57
56
0
0
43
0.99
19118--19159
21
2.0
21
90
0
66
73
2
2
21
1.06

Tables:   1

The End!