Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013659.1 Corchorus capsularis cultivar CVL-1 contig13680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48154

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
246--298
17
3.1
17
75
8
54
33
0
7
58
1.26
820--1771
339
2.8
330
79
7
972
37
15
13
32
1.87
10143--10167
12
2.1
12
100
0
50
0
24
16
60
1.36
23269--23305
3
12.3
3
100
0
74
67
0
32
0
0.91
24791--24918
17
7.7
17
84
4
163
25
14
29
31
1.94
25337--25548
30
7.4
28
74
12
157
8
31
34
25
1.87
25337--25495
57
2.8
57
82
7
171
9
31
34
24
1.87
25374--25548
87
2.0
86
82
9
214
9
29
35
25
1.87
25584--25649
29
2.2
31
91
5
109
10
33
37
18
1.85
25597--25667
29
2.5
28
84
4
90
11
35
33
19
1.88
27389--27426
12
3.2
12
92
7
60
47
28
15
7
1.74
27770--27824
18
3.1
18
86
0
74
40
14
27
18
1.89
28951--29082
26
5.0
26
84
7
151
6
37
39
17
1.74
29575--29686
17
6.7
17
89
1
165
24
12
31
32
1.92
31209--31233
2
12.5
2
100
0
50
52
0
0
48
1.00
32873--32909
18
2.0
20
89
10
60
16
5
21
56
1.59
36944--37009
32
2.1
32
100
0
132
36
9
12
42
1.74

Tables:   1

The End!