Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013661.1 Corchorus capsularis cultivar CVL-1 contig13682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58251

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4910--4978
32
2.1
33
89
5
104
34
17
17
30
1.93
6025--6281
129
2.0
129
92
0
424
32
10
24
31
1.90
31252--31349
41
2.4
41
89
0
142
28
38
9
23
1.85
31252--31363
41
2.7
41
84
2
109
33
35
8
21
1.85
38735--38759
2
12.5
2
100
0
50
48
0
0
52
1.00
39290--39333
21
2.1
21
86
0
61
43
9
22
25
1.82
50399--50426
2
14.0
2
100
0
56
50
0
0
50
1.00
52271--52361
7
12.1
7
83
12
110
15
43
0
40
1.46
52282--52365
39
2.2
39
100
0
168
15
44
0
40
1.47
52909--52955
24
2.0
24
100
0
94
25
19
0
55
1.43
57821--57906
45
1.9
45
83
4
111
38
16
11
33
1.85
57780--58247
22
21.5
22
70
12
179
36
15
10
37
1.82
57975--58059
23
3.7
23
87
1
109
37
15
9
37
1.80

Tables:   1

The End!