Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013662.1 Corchorus capsularis cultivar CVL-1 contig13683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51671

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28--257
22
10.5
22
71
12
141
33
14
10
41
1.80
4--194
44
4.4
44
77
5
138
34
13
9
42
1.78
4--169
88
1.9
88
81
7
203
33
13
10
42
1.80
280--520
22
10.8
21
67
18
103
37
18
7
36
1.79
28--515
44
10.9
43
70
15
172
35
16
9
38
1.81
2021--2086
31
2.1
31
91
0
105
51
3
18
27
1.60
6266--6354
44
2.0
44
97
2
171
37
13
14
34
1.86
14376--14405
2
14.5
2
93
6
51
46
0
3
50
1.18
17934--17985
24
2.1
25
82
3
61
7
25
9
57
1.57
18268--18293
2
13.0
2
100
0
52
50
0
0
50
1.00
22235--22269
13
2.7
13
95
0
61
20
37
8
34
1.83
30212--30236
6
4.2
6
100
0
50
0
16
16
68
1.22
34359--34393
2
17.5
2
100
0
70
48
0
0
51
1.00
35412--35502
39
2.3
39
100
0
182
35
18
6
39
1.77
36730--36838
51
2.1
52
93
3
184
46
22
6
24
1.75
40203--40231
15
1.9
15
100
0
58
37
20
13
27
1.91
40301--40374
35
2.1
35
100
0
148
27
22
20
29
1.98
43066--43100
15
2.3
15
95
0
61
20
8
42
28
1.81

Tables:   1

The End!