Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013663.1 Corchorus capsularis cultivar CVL-1 contig13684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47598

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4750--4803
29
2.0
27
82
13
67
33
12
12
40
1.82
17172--17260
45
2.0
45
97
0
169
7
25
4
61
1.42
17289--17377
11
7.5
11
70
22
65
17
11
3
67
1.35
18844--18922
40
2.0
40
89
0
122
29
12
16
41
1.85
26770--26847
41
1.9
41
89
5
122
30
12
12
43
1.81
27905--27984
41
1.9
41
87
12
119
57
1
7
33
1.35
29911--29943
2
16.5
2
100
0
66
48
0
0
51
1.00
31210--31605
210
1.9
212
91
2
663
32
9
9
48
1.69
31784--32149
139
2.6
138
86
5
484
44
9
10
35
1.72
32458--32789
140
2.4
139
91
3
524
42
9
10
37
1.72
34701--35295
310
1.9
311
80
6
706
36
14
11
37
1.82
35558--35596
17
2.3
17
86
8
53
58
2
0
38
1.12
41834--44738
329
8.8
328
73
10
1892
37
15
14
32
1.88
45164--45221
29
2.0
29
100
0
116
31
24
27
17
1.97
45372--45643
108
2.6
106
91
2
424
39
9
8
43
1.66

Tables:   1

The End!