Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013665.1 Corchorus capsularis cultivar CVL-1 contig13686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2170
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:216 original size:13 final size:14

Alignment explanation


    Indices: 198--226  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        188 TTGTTTTGAA

                          
        198 AATTTG-AGGTTTT
          1 AATTTGAAGGTTTT

                          
        211 AATTTGAAGGTTTT
          1 AATTTGAAGGTTTT

              
        225 AA
          1 AA

        227 AGGATTTGAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48


Consensus pattern (14 bp):   
AATTTGAAGGTTTT
Done.