Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013670.1 Corchorus capsularis cultivar CVL-1 contig13691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10381
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34


Found at i:4329 original size:87 final size:87

Alignment explanation


    Indices: 4208--4426  Score: 311
    Period size: 87  Copynumber: 2.6  Consensus size: 87

       4198 CCACTATCAA

                     *        *                    *                  *      
       4208 ATCTTCCTCTCCTGCATGCTTTGAA-ATGCTCTCCTCCTTCTCATTTGATGCCATTGCTTCAACT
          1 ATCTTCCTCCCCTGCATGTTTTGAAGA-GCTCTCCTCCTCCTCATTTGATGCCATTGCCTCAACT

                *        *         
       4272 ACCGTGACACGGGTTTCAGCCTC
         65 ACCGCGACACGGGATTCAGCCTC

                                                                            *
       4295 ATCTTCCTCCCCTGCATGTTTTGAAGAGCTCTCCTCCTCCTCATTTGATGCCATTGCCTCAACTT
          1 ATCTTCCTCCCCTGCATGTTTTGAAGAGCTCTCCTCCTCCTCATTTGATGCCATTGCCTCAACTA

                                  
       4360 CCGCGACACGGGATTCAGCCTC
         66 CCGCGACACGGGATTCAGCCTC

             **                               *             
       4382 AAGTTCCTCCCCTGCATGTTTTGAAGAG--C-CCACCTCCTCATTTGA
          1 ATCTTCCTCCCCTGCATGTTTTGAAGAGCTCTCCTCCTCCTCATTTGA

       4427 CTCCACCATT


Statistics
Matches: 121,  Mismatches: 10, Indels: 5
        0.89            0.07        0.04

Matches are distributed among these distances:
  84   15  0.12
  85    1  0.01
  87  104  0.86
  88    1  0.01

ACGTcount: A:0.17, C:0.35, G:0.16, T:0.33


Consensus pattern (87 bp):   
ATCTTCCTCCCCTGCATGTTTTGAAGAGCTCTCCTCCTCCTCATTTGATGCCATTGCCTCAACTA
CCGCGACACGGGATTCAGCCTC

Found at i:6631 original size:3 final size:3

Alignment explanation


    Indices: 6623--6662  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

       6613 ATATATGTAT

                                                                 
       6623 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A

       6663 GATAAAAAAA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.