Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013671.1 Corchorus capsularis cultivar CVL-1 contig13692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40744

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3864--3892
6
4.8
6
100
0
58
68
0
31
0
0.89
14798--14848
25
2.0
25
85
11
68
52
1
7
37
1.42
17004--17033
15
2.0
15
93
0
51
30
13
20
36
1.90
21565--21603
2
19.0
2
94
5
69
48
2
0
48
1.15
24875--24912
17
2.2
17
100
0
76
36
10
5
47
1.61
33144--33187
2
22.0
2
95
0
70
50
0
45
4
1.22
35549--35578
11
2.6
11
94
5
51
3
10
0
86
0.67
38032--38122
29
3.1
29
60
12
69
21
7
21
48
1.75
38019--38138
58
2.1
58
100
0
240
20
9
20
50
1.74
39413--39468
15
3.2
19
66
23
59
41
14
0
44
1.45
39401--39473
33
2.2
33
97
2
137
43
13
0
42
1.44
40204--40237
2
17.5
2
93
6
61
50
0
0
50
1.00

Tables:   1

The End!