Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013677.1 Corchorus capsularis cultivar CVL-1 contig13698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56332

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2986--3025
2
20.0
2
100
0
80
50
0
0
50
1.00
4376--4438
29
2.1
30
85
2
83
36
14
30
19
1.91
4869--4933
27
2.4
27
76
5
69
35
9
13
41
1.77
5143--5420
103
2.7
100
83
5
344
40
8
8
42
1.65
5173--5420
103
2.5
102
88
3
360
40
9
8
41
1.67
11174--11222
25
2.0
25
92
4
82
18
14
4
63
1.46
16883--16932
22
2.3
22
89
0
73
46
14
2
38
1.56
16905--16966
31
2.0
31
83
0
79
40
16
6
37
1.74
16936--17026
22
4.1
22
77
5
85
35
17
10
36
1.85
19667--22069
331
7.4
328
76
11
1876
36
14
13
34
1.86
22401--22532
66
2.0
66
92
2
221
56
6
9
28
1.54
22467--22495
2
15.0
2
92
7
51
51
0
0
48
1.00
24473--24507
3
11.7
3
100
0
70
68
0
0
31
0.90
24917--24966
24
2.1
24
81
7
57
56
0
0
44
0.99
26950--26985
3
12.3
3
94
5
65
30
0
0
69
0.89
29442--29531
45
2.0
45
93
0
153
25
21
20
33
1.97
33808--33847
2
20.0
2
100
0
80
50
0
0
50
1.00
43365--43527
60
2.7
60
93
1
265
34
23
18
23
1.96
43396--43496
29
3.4
28
72
17
80
32
23
19
23
1.98
43361--43528
31
5.5
31
71
16
136
33
23
18
24
1.97
43559--43680
31
4.0
31
79
7
160
26
19
18
36
1.94
44218--44344
44
2.9
44
74
4
114
33
12
6
48
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44396--44451
22
2.5
22
76
2
58
37
21
10
30
1.87
44496--44791
22
13.7
23
69
16
134
35
14
8
40
1.77
44321--44789
44
10.8
44
68
11
134
36
15
10
38
1.81
44759--44797
20
2.0
20
100
0
78
25
23
10
41
1.86
44873--45042
22
7.8
21
73
11
87
32
12
12
41
1.81
44919--45485
22
25.9
21
66
16
140
35
16
10
37
1.83
45645--45710
31
2.1
32
88
5
100
48
4
18
28
1.67
46079--46299
111
2.0
109
91
1
361
34
9
14
41
1.78
53188--53227
21
1.9
21
100
0
80
35
25
20
20
1.96

Tables:   1

The End!