genome.fa.s13678.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013678.1 Corchorus capsularis cultivar CVL-1 contig13699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42883

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11855--11913	30	2.0	29	86	3	82	44	8	18	28	1.79
15266--15308	6	7.2	6	94	0	77	46	34	2	16	1.60
15307--15576	39	7.0	39	93	2	449	22	35	18	23	1.96
15307--15576	77	3.5	76	92	3	443	22	35	18	23	1.96
15307--15564	116	2.2	116	94	1	448	22	35	17	23	1.95
17742--17778	6	6.2	6	87	0	56	43	35	5	16	1.71
17742--17778	18	2.1	18	100	0	74	43	35	5	16	1.71
17777--17969	38	5.0	38	92	1	323	21	36	18	23	1.95
20602--20667	33	2.0	33	100	0	132	24	9	12	54	1.66
24911--24949	9	4.3	9	80	0	51	33	12	0	53	1.39
24901--24939	6	6.5	6	100	0	78	33	15	0	51	1.44
25036--25077	20	2.2	18	87	8	57	21	9	7	61	1.50
24988--25306	159	2.0	159	93	3	545	39	7	7	45	1.62
25325--25388	34	1.9	33	84	9	85	39	3	1	56	1.25
27116--28220	296	3.8	295	73	11	1062	33	15	15	34	1.90
27476--28534	296	3.6	291	74	9	1093	35	13	14	36	1.86
27172--28526	590	2.3	588	94	1	2361	34	14	15	35	1.87
28685--30053	331	4.1	331	78	8	1253	32	13	15	38	1.86
34014--34069	28	2.0	28	100	0	112	25	10	21	42	1.85
35359--35410	25	2.1	25	100	0	104	17	34	3	44	1.67
36969--37132	31	5.4	30	65	17	99	37	16	15	30	1.90
36968--37139	60	2.9	60	88	1	256	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37182--37338	60	2.6	59	77	6	163	28	16	19	35	1.94
38294--38368	37	2.0	37	100	0	150	48	2	10	38	1.52
41759--41787	12	2.3	13	94	5	51	37	13	0	48	1.43

Tables:   1

The End!