Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013679.1 Corchorus capsularis cultivar CVL-1 contig13700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 812

Length: 1354
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39


Found at i:1092 original size:15 final size:15

Alignment explanation


    Indices: 1072--1101  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1062 ATGGGTGGGA

                           
       1072 AAGTTTTATCTCCCC
          1 AAGTTTTATCTCCCC

                           
       1087 AAGTTTTATCTCCCC
          1 AAGTTTTATCTCCCC

       1102 CGTGATTTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40


Consensus pattern (15 bp):   
AAGTTTTATCTCCCC
Done.