Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013681.1 Corchorus capsularis cultivar CVL-1 contig13702, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71903

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150--191
22
1.9
22
85
9
59
30
11
2
54
1.49
390--474
23
3.7
23
84
1
100
37
14
7
41
1.73
351--474
45
2.8
45
80
10
130
37
14
8
38
1.77
173--604
22
19.9
22
68
14
161
36
15
10
37
1.82
764--1309
22
24.9
21
68
16
156
35
17
9
37
1.82
713--848
65
2.1
66
81
4
159
34
15
10
39
1.81
724--1310
44
13.4
44
68
15
180
35
17
9
37
1.82
1128--1311
22
8.3
22
76
11
160
38
19
9
33
1.84
1476--1513
19
2.0
20
85
15
53
63
2
5
28
1.30
1816--1850
2
17.0
2
88
5
52
45
0
5
48
1.26
2613--2685
31
2.3
31
77
13
78
35
23
12
28
1.91
6608--6642
1
35.0
1
100
0
70
100
0
0
0
0.00
14393--14520
33
3.9
33
90
3
188
13
42
32
11
1.80
14561--14636
33
2.3
35
81
9
95
14
36
36
11
1.83
14648--14711
33
1.9
33
84
12
87
10
43
31
14
1.79
17762--17786
2
12.5
2
100
0
50
48
0
0
52
1.00
24456--24569
57
2.0
57
98
0
219
47
18
12
21
1.81
29541--29570
15
2.0
15
100
0
60
33
20
20
26
1.97
30361--30395
6
5.8
6
96
0
61
11
0
2
85
0.69
45200--45231
2
16.0
2
100
0
64
50
0
0
50
1.00
62464--62488
12
2.1
12
100
0
50
32
24
0
44
1.54
62943--62978
17
2.1
17
100
0
72
58
5
16
19
1.58

Tables:   1

The End!