Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013682.1 Corchorus capsularis cultivar CVL-1 contig13703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51555

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--45
2
22.5
2
100
0
90
48
0
0
51
1.00
17815--17859
13
3.5
13
90
3
74
22
13
8
55
1.65
23326--23454
44
3.0
43
86
6
163
30
27
18
24
1.98
23336--23466
43
3.0
44
88
5
178
28
27
17
26
1.98
23669--23748
37
2.2
37
95
0
142
43
20
7
28
1.78
28792--28816
13
1.9
13
100
0
50
64
0
4
32
1.12
30589--30643
26
2.1
26
96
0
101
27
21
16
34
1.95
35433--35474
17
2.5
17
100
0
84
28
28
14
28
1.95
36029--36058
14
2.1
14
100
0
60
13
13
46
26
1.80
37533--37559
2
13.5
2
100
0
54
51
0
0
48
1.00
51061--51105
19
2.2
21
88
11
67
2
22
0
75
0.91

Tables:   1

The End!