Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013685.1 Corchorus capsularis cultivar CVL-1 contig13706, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36281

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
414--2925
335
7.5
328
74
10
1783
32
14
15
37
1.88
3031--3073
14
2.9
15
74
19
54
30
30
13
25
1.94
4484--4535
23
2.3
23
86
6
70
48
25
11
15
1.78
10034--10083
23
2.2
23
89
7
75
44
20
4
32
1.70
13443--13509
23
2.7
26
67
19
70
59
4
8
26
1.47
17083--17111
1
29.0
1
100
0
58
0
0
0
100
0.00
18165--18201
18
2.1
18
94
0
65
37
10
21
29
1.88
18549--18665
60
2.0
60
98
0
225
25
19
19
35
1.96
22753--22777
13
1.9
13
100
0
50
16
8
12
64
1.49
24360--24388
2
14.5
2
100
0
58
51
0
0
48
1.00
26581--26626
21
2.2
21
85
11
60
10
4
15
69
1.32
27195--27737
269
2.0
268
94
1
946
42
16
11
29
1.84
28810--28851
20
2.1
20
90
0
66
47
0
30
21
1.51
29165--29297
59
2.3
59
97
0
248
49
19
5
25
1.69
29245--29319
37
2.0
37
97
0
141
52
14
8
25
1.69
29601--29637
11
3.4
11
92
0
65
43
2
8
45
1.47

Tables:   1

The End!