Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013690.1 Corchorus capsularis cultivar CVL-1 contig13711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156465

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15194--15258
25
2.6
25
100
0
130
44
3
23
29
1.68
19249--19301
26
2.1
24
86
6
70
64
0
3
32
1.12
22114--22157
2
22.0
2
95
0
79
50
2
0
47
1.13
32000--32032
2
16.5
2
100
0
66
48
0
0
51
1.00
41875--41902
3
9.3
3
100
0
56
67
0
0
32
0.91
42551--42670
42
2.9
42
98
0
231
39
16
15
29
1.89
51497--51529
13
2.5
13
95
0
57
33
18
12
36
1.88
64369--64429
29
2.1
29
84
3
79
47
18
16
18
1.83
67504--67544
6
6.8
6
100
0
82
34
34
17
14
1.90
70085--70333
127
2.0
128
97
0
473
27
15
16
40
1.89
71711--71742
14
2.2
15
94
5
57
34
12
18
34
1.89
72599--72733
31
4.4
31
84
0
135
17
21
26
34
1.96
72596--72730
62
2.2
62
86
0
180
17
21
26
34
1.96
73812--73869
21
2.8
20
75
17
57
12
62
0
25
1.30
83304--83362
29
2.0
29
100
0
118
27
27
13
32
1.94
91965--92047
32
2.6
32
96
0
148
24
4
30
40
1.75
100296--100367
37
2.0
35
89
5
108
15
20
8
55
1.66
113926--113991
34
1.9
34
96
0
123
36
15
18
30
1.91
118656--118687
2
16.0
2
100
0
64
0
50
0
50
1.00
133050--133097
21
2.3
21
92
0
78
56
31
4
8
1.48
133396--133428
16
2.1
17
88
11
52
21
3
15
60
1.48
146959--146997
2
19.0
2
94
5
69
48
0
2
48
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146961--147000
19
2.1
19
100
0
80
47
0
5
47
1.24
153584--153618
3
11.7
3
100
0
70
65
0
0
34
0.93
154073--154330
106
2.5
105
87
3
360
42
8
8
40
1.67

Tables:   1

The End!