Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013691.1 Corchorus capsularis cultivar CVL-1 contig13712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39569

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--33
2
16.5
2
100
0
66
48
0
0
51
1.00
1452--1489
14
2.8
13
88
11
58
0
36
0
63
0.95
4559--4605
22
2.1
22
100
0
94
19
12
23
44
1.85
10114--10140
2
13.5
2
100
0
54
51
0
0
48
1.00
12963--12993
16
1.9
16
93
0
53
64
6
19
9
1.45
14677--14714
19
2.1
19
90
5
60
34
0
0
65
0.93
18335--18381
23
2.0
23
95
0
85
44
10
21
23
1.83
21420--21560
70
2.0
70
98
0
273
20
12
11
56
1.66
25781--25808
2
14.0
2
100
0
56
50
0
0
50
1.00
26582--26628
23
2.0
23
91
0
76
25
0
38
36
1.56
26585--26635
23
2.2
23
82
0
57
29
0
37
33
1.58
31756--31802
23
2.0
23
100
0
94
12
4
12
70
1.31
31795--31831
12
3.0
12
84
7
56
21
0
13
64
1.27
32643--33298
335
2.0
325
83
4
823
34
16
14
34
1.89
33522--35536
325
6.4
320
72
12
1213
36
17
14
32
1.90
34337--35213
318
2.9
299
84
7
983
36
16
14
33
1.89
34600--35543
318
2.9
315
84
5
1198
35
16
14
33
1.89
35282--35773
256
1.9
257
84
3
659
37
15
12
33
1.86
36725--39539
974
2.9
967
84
4
3636
36
17
13
33
1.89
36694--39566
325
8.9
325
83
4
3283
36
17
13
32
1.89

Tables:   1

The End!