Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013692.1 Corchorus capsularis cultivar CVL-1 contig13713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16058
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Found at i:2186 original size:324 final size:323
Alignment explanation
Indices: 1362--6246 Score: 5601
Period size: 324 Copynumber: 15.1 Consensus size: 323
1352 AATTCAGTTG
* * *
1362 CAAAAAGATTGACTGGTTTTCACGCTTCTAATATCGTTTTTTAAT-TTTTCTTTCCGGATTAATT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTT-TTTCCGAATTAATT
*
1426 TCTAATTAAATCGAAACAAGATTCAGATTCTCGTAAAAA-AAATCCTTAAATCCAATGTGGCTGA
65 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
** * * *
1490 GATTTAATTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACTGTGT
130 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGC
* * * * * *
1555 CGGGACCCTGAAACGGGTTTTTGGTCCAAAAACCGTG-TTGTAACATACACGATTTCGAG-TAAA
195 CGGG-CCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTA-GTACACGATTTCG-GCTAAA
* * * * * *
1618 AACTAACCCGAAAA-TTTTTTCTCAATTTTTTTGCCAAAATACTCGGTAAAACTATATATTTCAA
257 AACTGACCCGAAAAGTTTTTTCTCAA-TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAA
1682 CAC
321 CAC
**
1685 CAAAAAGATTGATTGGTTTTCACGCTTCTAATATCGTTTTTCAAT-TTTTTTTCCGAATTAATTT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
* * ** * *
1749 CCAATTAAATCGAATCAAGATTCAGATGCTCG-AAAATACAAATTTTTAAATCCAATTTGGTTGA
66 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA-ACAAATCCTTAAATCCAATGTGGCTGA
* * * *
1813 AATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTT-TTCGCAAAAATCATGCAAAACCGAG
130 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGC-CAAAAATCATGCAAAACTGAG
** * * *
1877 CCGAACCTCCGAAACACGTTTTTAGTCCAAAAACCAT-AGTGGTTAATACACGATTTCGGCTAAA
194 CCGGGCC-CCGAAACGCGTTTTTAGTCCAAAAACCGTGA-TGGTTAGTACACGATTTCGGCTAAA
** * * * *
1941 AACTGACATGAAGAGTTCTTTCTCAATTTTTTGCCACAATACACAG-AAAAATATATAATTTAAC
257 AACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAAC
2005 AC
322 AC
* * *
2007 CAAAATGATTGACGGGTTTTTCACGCTTCTTATATCGTTTTTCAATATTTTTTTCCGAATTACTT
1 CAAAAAGATTGACGGG-TTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATT
* * * *
2072 TCTAATTAAATCGAAACAAGATTCATATGCTCGTAAAAAGAAATCATTAAATCAAATGTGGCTGA
65 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
* * * * * *
2137 GATTTGGTTAGATGAATATAGATATTTGAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAGT
130 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGC
* * * * * *
2202 CGTGACCCAAAAGGCGTTTCTAG-CCAAAAACC----------GT-CACGATTTCGGCCAAAAAC
195 CGGGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAC
* * * *
2255 TGACCCGAAAAGTTTTATC-CAATTTTTTGCCGCAATACTCACAAAAAAATTATATAATTCAGCA
260 TGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-GAAAAAA-TATATAATTCAACA
2319 C
323 C
* * *
2320 AAAAAAGATTGACGGGTTTTCACGCTTCTAATATCG-----C--TTTTTTTTTCTGAATTAATTT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
* * *
2378 CTAATTAAATCAAAACAAGAATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
66 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * * *
2443 ATTTGGTTAGATGAGTATAGATATTTCAAGGAGACTTTCTTCCAAAAATCATGCAATACAGAGTC
131 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCC
* * * * *
2508 GTGGCCCCGAAACGCCTTTTTAGACTAAAAACCGTGATGGCTAGTACACTATTTCGGCTAAAAAC
196 G-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAC
* * * *
2573 TAACCTGAAAAGGTTTTTT-TCAA-ATTTTGCCCCAATACTCAGAAAAAATATATAATTCAACAC
260 TGACCCGAAAA-GTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACAC
* * ** ** * * *
2636 CGAAAAGATTGATAGACTTTTCAAACTTCTAATATCGTTTTT-TATATATTCTTTCCGGATTAAT
1 CAAAAAGATTGA-CGGGTTTTCACGCTTCTAATATCGTTTTTCAATAT-TTTTTTCCGAATTAAT
* *
2700 TTCTAATTAAATCGAAACAAGATTCAGATTCTCGTAAAAACAAATCCTTAGATCCAATGTGGCTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* * *
2765 AGATTTAGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAATATCATGCAAAACTGTG
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG
* * *
2830 TCGGGGCCCCGAAACGCGTTTTTGGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCCAAAA
194 -CCGGGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
* * * * * *
2895 ATTGACCCGAAATGTTTTTTCCCAATTTTTTGCCATAATACTTAGAAAAAATATATAATTCCACA
258 ACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACA
2960 C
323 C
* ** * * * * *
2961 CAAAAAAATTTTCGGGCTTTTCACGCTTCTTATATCG--TTTAAATTTTTTTTTTCCAAATTACT
1 CAAAAAGATTGACGGG-TTTTCACGCTTCTAATATCGTTTTTCAA-TATTTTTTTCCGAATTAAT
** * * * * *
3024 TTCTAATTAAATCGAAACAAGATTCATTTGCTCGTAAAAAGAAATCTTTTAATCGAATTTGGCTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* * * * * ***
3089 AGATTTGGATAGAAGAATATAGATAATTCAAGGAGTCCTTCTACCAAAAATCATGCAAAAAAAAG
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG
* * * * * * *
3154 TCGTGGCCCCGAAACGAGTTTCTAG-CCAAAAAACTGTGATCGTTAGTACACAATTTCGGCCAAA
194 CCG-GGCCCCGAAACGCGTTTTTAGTCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
* * *
3218 AACTGACCCGAAATGTTTTTTTCCCAATTTTTTGCCACAATACTTAGAAAAAAATATATAATTCA
257 AACTGACCCGAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCAG-AAAAAATATATAATTCA
3283 ACAC
320 ACAC
*
3287 CAAAAAGATTGACGAGTTTTCACGCTTCTAATATCGATTTTTC-A-A-TTTTTTCCGAATTAATT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCG-TTTTTCAATATTTTTTTCCGAATTAATT
* * * * *
3349 TCTAATTAAATCGAAACAAGATTAAGATGCTCGAAAAAACAAATTCTTAAATCCAATTTGGTTGA
65 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
* * *
3414 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTTTGGCAAAAGTCATGCAAAACTGAGC
130 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGC
* * *
3479 CGAGGCCCCAAAACGCGTTTTTAGTCCAAAAACCGT-AGTGGTTAATACACGGTTTCGGCTAAAA
195 CG-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGA-TGGTTAGTACACGATTTCGGCTAAAA
** * * *
3543 ACTGACATGAAAAGTTCTTTCTCAAATTTTTGCCACAATACACAGAAAAAATATATAATTCAACA
258 ACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACA
3608 C
323 C
* * * *
3609 CAAAAAGATTGATGGGTTTTTCACGCTTCTTATATCGTTTTTCAATTTTTTTTTTCCGAATTACT
1 CAAAAAGATTGACGGG-TTTTCACGCTTCTAATATCGTTTTTCAA-TATTTTTTTCCGAATTAAT
* * * *
3674 TTCTAATTAAATCGAAACAAGATTCACATGCTCGTAAAAAGAAATCATTAAATCAAATGTGGCTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* * * *
3739 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAG
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG
* * * *
3804 TCGTGG-CCCAAAACGCGTTTCTAG-CCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
194 CCG-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
* *
3867 ACTGACCCGAAAAGTTTTTTC-CAATTTTTTGCCGCAATACTCACCAAAAAATTATATAATTCAA
258 ACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-GAAAAAA-TATATAATTCAA
3931 CAC
321 CAC
* * * *
3934 AAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTC-TTTTTTTTTTCTGAATTAATTT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
* * * * * *
3998 CTAATTAAATCAAAACAAGAATCAAATGCTCGT-ATAATAAATCCTTAAATCCAATATGGCTGAG
66 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* ** * **
4062 ATTTGGTTAGATGAGTATAGATATTTCAAGGAAACTTTCTGCTAAAAATCATGCAAAACAAAGCC
131 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCC
* ** * *
4127 GATGCCTAGAAACGCGTTTTTAGTCTAAAAACCGTGATGGTTTGTACTTAGTACACTATTTCGGC
196 G-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGAT-G---G---TTAGTACACGATTTCGGC
* * * *
4192 TAAAAACTAACCCGAAAAGTTTTTTTTCAA-ATTTTGCCCCAATACTCAGAAAAAATATATAATT
253 TAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
4256 CAACAC
318 CAACAC
* * ** *
4262 CGAAAAGATTGATAGACTTTTCAAGCTTCTAATATCGTTTTTCAA-ATTTTTTTTCCGAATTAAT
1 CAAAAAGATTGA-CGGGTTTTCACGCTTCTAATATCGTTTTTCAATA-TTTTTTTCCGAATTAAT
* * * * * *
4326 TTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATACAATTTAGTTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* * * * **
4391 AGATTTAGTTAGATGCATATAGATATTTCAAGGAGTAC-TTCTGGCGAAAATCATGCAAAACAAA
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGT-CTTTCTGCCAAAAATCATGCAAAACTGA
* * * * * * * *
4455 GTCGTTGTCCCGAAACGCGTTTTTAG-CAAAAAACAGTGATAGTTAGTACACGATTTCGCCCAAA
193 GCCG-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
*
4519 AACTGACCCGAAAAGGTTTTTC-CAATTTTTTGCCACAATACTCAGAAAAAAATTATATAATTCA
257 AACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAG-AAAAAA-TATATAATTCA
*
4583 GCAC
320 ACAC
* * *
4587 CAACAAGATTGAGGGGTTTTCACGCTTCTAATATCG----T---T-TTTTTTTCTGAATTAATTT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
* * * * * * *
4644 CTAATTAAATCAAAACAAGAATCAAATGCTCGT-ATAATAAATCCTTAAATCTAATATGGCTGAG
66 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * ** * **
4708 ATTTGGTTAGATGAGTATAAATATTTCAAGGAAACTTTCTGCTAAAAATCATGCAAAACAAAGCC
131 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCC
* * * * *
4773 GAGGCCTCGAAACGCGTTTTTAGTCTAAAAATCATGATGGTTTGTACTTAGTACACTATTTCGGC
196 G-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGAT-G---G---TTAGTACACGATTTCGGC
* * *
4838 TAAAAACTAACCCGAAAAGTTTTTT-TCAA-ATTTTGCCCCAATACTCAGAAAAAATATATAATT
253 TAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
4901 CAACAC
318 CAACAC
* * * ** * *
4907 CGAAGAGATTGATAGACTTTTCAAGCTTCTAATATCATTTTTCAA-ATTTTTTTTCCGAATTAAT
1 CAAAAAGATTGA-CGGGTTTTCACGCTTCTAATATCGTTTTTCAATA-TTTTTTTCCGAATTAAT
* * * * * *
4971 TTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATACAATTTAGTTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* *
5036 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTTTGGCAAAAATCATGCAAAACTGAG
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG
* * *
5101 CCGAGGCCCCAAAACGCGTTTTTAGTCCAAAAACCGT-AGTGGTTAATACACGGTTTCGGCTAAA
194 CCG-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGA-TGGTTAGTACACGATTTCGGCTAAA
** * * * * *
5165 AACTGACATGAAAAGTTCTTTCTCAAATTTTTGCCACAATACACACAAAAAAAATATAATTCAAC
257 AACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAAC
5230 AC
322 AC
* * *
5232 CAAAAATATTGACGGGTTTTACACGCTTCTTATATCGTTTTTCAATATTTTTTTTCCGAATTACT
1 CAAAAAGATTGACGGGTTTT-CACGCTTCTAATATCGTTTTTCAATA-TTTTTTTCCGAATTAAT
* * * *
5297 TTCTAATTAAATCGAAACAAGATTCATATGCTCGTAAAAAGAAATCATTAAATCAAATGTGGCTG
64 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* * * *
5362 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAG
129 AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG
* * * * * *
5427 TCGTGG-CCCAAAACGCGTTTCTAG-CCCAAAACCGTGATGGTTAGTACACGATTTCGGCCAATA
194 CCG-GGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
* *
5490 ACTGACCCGAAAAGTTTTTTC-CAATTTTTTGCCGCAATACTCACAAAAAAATTATATAATTCAA
258 ACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-GAAAAAA-TATATAATTCAA
5554 CAC
321 CAC
* *
5557 AAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTC--T-TTTTTTTCTGAATTAATTT
1 CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
* * * * *
5619 CTAATTAAATCAAAACAAGAATCAAATGCTCGTAAAAATAAATCCTTAAATCCAATGTGGTTGAG
66 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * *
5684 ATTTAGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCAAAATTGTGTC
131 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-C
* * * * * *
5749 GGGGCCCCGAAACACGTTTTTGGTTCAAAAACCATGATGGTTAGTAGACGATTTCGGCTAAAAAC
195 CGGGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAC
* * *
5814 TTACTCGAAAAGTTTTTTCTCAA-TTTTTGCCCCAATACTCAGAAAAAATATATAATTCAACAC
260 TGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACAC
* * * * *
5877 CAAAAAGATTGACGGGCTTTTCACGCTTCTTATATCGTTTTTCATTTTTTTTTTTCGAATTACTT
1 CAAAAAGATTGACGGG-TTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATT
* * *
5942 TCTAATTAAATCGAAACAAGATTCATATGCTCGTAAAAAGAAATCCTTAAATCTAATGTGGCTGA
65 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
*
6007 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATAATGCAAAACTGAGC
130 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGC
** * * * *
6072 CAGGGCCTTGAAACGCGTTTTTAATCCAAAAACTGTGATTGTTAGTACACGATTTCGGCTAAAGA
195 C-GGGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
* * * **
6137 CTGACCTGAGAAGTTTTTTCTCAATTTTTTGCCAAAATACTTTG-AAAAATATATAATTCAACAC
259 CTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACAC
* *
6201 CAAAAAGATTGACGTGTTTTTCACGCTTCTAATATCATTTTTCAAT
1 CAAAAAGATTGACG-GGTTTTCACGCTTCTAATATCGTTTTTCAAT
6247 GTGGCTGACA
Statistics
Matches: 3857, Mismatches: 584, Indels: 241
0.82 0.12 0.05
Matches are distributed among these distances:
305 134 0.03
306 15 0.00
307 9 0.00
310 20 0.01
311 32 0.01
312 25 0.01
313 27 0.01
314 1 0.00
315 95 0.02
316 81 0.02
317 27 0.01
318 42 0.01
319 9 0.00
320 187 0.05
321 159 0.04
322 282 0.07
323 481 0.12
324 1167 0.30
325 323 0.08
326 303 0.08
327 2 0.00
328 28 0.01
329 81 0.02
330 226 0.06
331 100 0.03
332 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (323 bp):
CAAAAAGATTGACGGGTTTTCACGCTTCTAATATCGTTTTTCAATATTTTTTTCCGAATTAATTT
CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCC
GGGCCCCGAAACGCGTTTTTAGTCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
GACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACAC
Found at i:4824 original size:646 final size:642
Alignment explanation
Indices: 1316--6245 Score: 5230
Period size: 646 Copynumber: 7.6 Consensus size: 642
1306 TTTCGGCATA
* * * * **** *
1316 AATTTTTTGACGCAATACTTATAAAAAAAATTATATAATTCAGTTGCAAAAAGATTGACTGGTTT
1 AATTTTTTGCCACAATACTCA-GAAAAAAA-TATATAATTCAACACCAAAAAGATTGACGGGTTT
*
1381 TCACGCTTCTAATATCGTTTTTTAATTTTTCTTTCCGGATTAATTTCTAATTAAATCGAAACAAG
64 TCACGCTTCTAATATCG-TTTTT--TTTTTC--T--GAATTAATTTCTAATTAAATCGAAACAAG
* * * **
1446 ATTCAGATTCTCGTAAAAA-AAATCCTTAAATCCAATGTGGCTGAGATTTAATTAGATGAATATA
122 AATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATA
* ** * *
1510 GATATTTCAAGGAGTCTTTCTGCCAAAAATCATACAAAACTGTGTCG-GGACC-CTGAAACGGGT
187 GATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGG-CCTC-GAAACGCGT
* * * *
1573 TTTTGGTCCAAAAACCGTG-T-TGTAACATACACGATTTCGAG-TAAAAACTAACCCGAAAA-TT
250 TTTTAGTCCAAAAACCGTGATGTGTTA-GTACACGATTTCG-GCTAAAAACTGACCCGAAAAGTT
* * * * * * *
1634 TTTTCTCAATTTTTTTGCCAAAATACTCGGTAAAACTATATATTTCAACACCAAAAAGATTGATT
313 TTTTTTCAA-TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATA
*
1699 GG-TTTTCACGCTTCTAATATCGTTTTTC-AATTTTTTTTCCGAATTAATTTCCAATTAAATCGA
377 GGCTTTTCACGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGA
* * * * * *
1762 ATCAAGATTCAGATGCTCG-AAAATACAAATTTTTAAATCCAATTTGGTTGAAATTTGGTTAGAT
442 AACAAGATTCAAATGCTCGTAAAA-ACAAATTCTTAAAT-CAATGTGGCTGAGATTTGGTTAGAT
* * ** * **
1826 GAAAATAGATATTTCAAGGAGTCTTT-TTCGCAAAAATCATGCAAAACCGAGCCG-AACCTCCGA
505 GAATATAGATATTTCAAGGAGTCTTTCTGC-CAAAAATCATGCAAAACAAAGTCGTGGCC-CCGA
* * * * **
1889 AACACGTTTTTAGTCCAAAAACCAT-AGTGGTTAATACACGATTTCGGCTAAAAACTGACATGAA
568 AACGCGTTTTTAGTCAAAAAACCGTGA-TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAA
*
1953 GA-GTTCTTTCTC
632 AAGGTT-TTTC-C
* * *
1965 AATTTTTTGCCACAATACACAG--AAAAATATATAATTTAACACCAAAATGATTGACGGGTTTTT
1 AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGGG-TTTT
* * *
2028 CACGCTTCTTATATCGTTTTTCAATATTTTTTTCCGAATTACTTTCTAATTAAATCGAAACAAGA
65 CACGCTTCTAATATCG---TT---T-TTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
* * * * *
2093 TTCATATGCTCGTAAAAAGAAATCATTAAATCAAATGTGGCTGAGATTTGGTTAGATGAATATAG
123 ATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
* * * * * * * * * *
2158 ATATTTGAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAGTCGTGACC-CAAAAGGCGTTTC
188 ATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTT
* *
2222 TAG-CCAAAAACC-----------GT-CACGATTTCGGCCAAAAACTGACCCGAAAAG-TTTTAT
253 TAGTCCAAAAACCGTGATGTGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTT
* * * * * * *
2273 CCAATTTTTTGCCGCAATACTCACAAAAAAATTATATAATTCAGCACAAAAAAGATTGA-CGGGT
318 TCAATTTTTTGCCACAATACTCA-GAAAAAA-TATATAATTCAACACCAAAAAGATTGATAGGCT
* * *
2337 TTTCACGCTTCTAATATCG-----C--TTTTTTTTTCTGAATTAATTTCTAATTAAATCAAAACA
381 TTTCACGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACA
* * *
2395 AGAATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAGTA
446 AGATTCAAATGCTCGTAAAAACAAATTCTTAAAT-CAATGTGGCTGAGATTTGGTTAGATGAATA
* * * * *
2460 TAGATATTTCAAGGAGACTTTCTTCCAAAAATCATGCAATACAGAGTCGTGGCCCCGAAACGCCT
510 TAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGCGT
* * * * * *
2525 TTTTAGACTAAAAACCGTGATGGCTAGTACACTATTTCGGCTAAAAACTAACCTGAAAAGGTTTT
575 TTTTAGTCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGG-TTT
*
2590 TTTC
639 TTCC
* * * * **
2594 AA-ATTTTGCCCCAATACTCAG-AAAAAATATATAATTCAACACCGAAAAGATTGATAGACTTTT
1 AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGA-CGGGTTTT
** *
2657 CAAACTTCTAATATCGTTTTTTATATATTCTTTCCGGATTAATTTCTAATTAAATCGAAACAAGA
65 CACGCTTCTAATATCGTTTTTT-T-T-TTC--T--GAATTAATTTCTAATTAAATCGAAACAAGA
* * * * *
2722 TTCAGATTCTCGTAAAAACAAATCCTTAGATCCAATGTGGCTGAGATTTAGTTAGATGAATATAG
123 ATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
* ** * * *
2787 ATATTTCAAGGAGTCTTTCTGCCAAATATCATGCAAAACTGTGTCGGGGCCCCGAAACGCGTTTT
188 ATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTT
* * * * *
2852 TGGTCCAAAAACCGTGATG-GTTAGTACACGATTTCGGCCAAAAATTGACCCGAAATGTTTTTTC
253 TAGTCCAAAAACCGTGATGTGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTT
* * * * * * *
2916 CCAATTTTTTGCCATAATACTTAGAAAAAATATATAATTCCACACCAAAAAAATT-TTCGGGCTT
318 TCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGAT-AGGCTT
* * *
2980 TTCACGCTTCTTATATCG--TTT-AAATTTTTTTTTTCCAAATTACTTTCTAATTAAATCGAAAC
382 TTCACGCTTCTAATATCGTTTTTCAAA--TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAAC
** * * * * *
3042 AAGATTCATTTGCTCGTAAAAAGAAA-TCTTTTAATCGAATTTGGCTGAGATTTGGATAGAAGAA
445 AAGATTCAAATGCTCGTAAAAACAAATTC-TTAAATC-AATGTGGCTGAGATTTGGTTAGATGAA
* * * * *
3106 TATAGATAATTCAAGGAGTCCTTCTACCAAAAATCATGCAAAAAAAAGTCGTGGCCCCGAAACGA
508 TATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGC
* * * * * * * *
3171 GTTTCTAGCCAAAAAACTGTGATCGTTAGTACACAATTTCGGCCAAAAACTGACCCGAAATGTTT
573 GTTTTTAGTCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG-GT
3236 TTTTCCC
637 TTTT-CC
* *
3243 AATTTTTTGCCACAATACTTAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGAGTTTTC
1 AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGGGTTTTC
* *
3308 ACGCTTCTAATATCGATTTTTCAATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG-ATT
66 ACGCTTCTAATATCG--TTTT---TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAATC
* * * *
3372 AAGATGCTCGAAAAAACAAATTCTTAAATCCAATTTGGTTGAGATTTGGTTAGATGAATATAGAT
126 AA-ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT
* * * * * *
3437 ATTTCAAGGAGTCTTTTTGGCAAAAGTCATGCAAAACTGAGCCGAGGCCCCAAAACGCGTTTTTA
190 ATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTTTA
* * ** * *
3502 GTCCAAAAACCGT-A-GTGGTTAATACACGGTTTCGGCTAAAAACTGACATGAAAAGTTCTTTCT
255 GTCCAAAAACCGTGATGT-GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTT
* * * *
3565 CAAATTTTTGCCACAATACACAGAAAAAATATATAATTCAACACCAAAAAGATTGATGGGTTTTT
319 CAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATAGGCTTTT
* * *
3630 CACGCTTCTTATATCGTTTTTCAATTTTTTTTTTCCGAATTACTTTCTAATTAAATCGAAACAAG
384 CACGCTTCTAATATCGTTTTTCAA-ATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
* *
3695 ATTCACATGCTCGTAAAAAGAAA-TCATTAAATCAAATGTGGCTGAGATTTGGTTAGATGAATAT
448 ATTCAAATGCTCGTAAAAACAAATTC-TTAAATC-AATGTGGCTGAGATTTGGTTAGATGAATAT
* * * * *
3759 AGATATTTCAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAGTCGTGG-CCCAAAACGCGTT
511 AGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGCGTT
* ** *
3823 TCTAG-CCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
576 TTTAGTCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGGTTTTT
3887 CC
641 CC
* * * *
3889 AATTTTTTGCCGCAATACTCACCAAAAAATTATATAATTCAACACAAAAAAGATTGACGGGTTTT
1 AATTTTTTGCCACAATACTCA-GAAAAAAATATATAATTCAACACCAAAAAGATTGACGGGTTTT
*
3954 CACGCTTCTAATATCGTTTTTCTTTTTTTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGAA
65 CACGCTTCTAATATCG------TTTTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAA
* * * *
4019 TCAAATGCTCGT-ATAATAAATCCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAGTATAGA
124 TCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGA
** * * * *
4083 TATTTCAAGGAAACTTTCTGCTAAAAATCATGCAAAACAAAGCCGATGCCTAGAAACGCGTTTTT
189 TATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTTT
* * *
4148 AGTCTAAAAACCGTGATGGTTTGTACTTAGTACACTATTTCGGCTAAAAACTAACCCGAAAAGTT
254 AGTCCAAAAACCGTGAT-G--TG---TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTT
* * *
4213 TTTTTTCAA-ATTTTGCCCCAATACTCAGAAAAAATATATAATTCAACACCGAAAAGATTGATAG
313 TTTTTTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATAG
* *
4277 ACTTTTCAAGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAA
378 GCTTTTCACGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAA
* * * * * * *
4342 TCAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATACAATTTAGTTGAGATTTAGTTAGATGC
443 ACAAGATTCAAATGCTCGTAAAAACAAATTCTTAAAT-CAATGTGGCTGAGATTTGGTTAGATGA
* * * *
4407 ATATAGATATTTCAAGGAGTAC-TTCTGGCGAAAATCATGCAAAACAAAGTCGTTGTCCCGAAAC
507 ATATAGATATTTCAAGGAGT-CTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAAC
* * * *
4471 GCGTTTTTAG-CAAAAAACAGTGATAGTTAGTACACGATTTCGCCCAAAAACTGACCCGAAAAGG
571 GCGTTTTTAGTCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGG
4535 TTTTTCC
636 TTTTTCC
* * *
4542 AATTTTTTGCCACAATACTCAGAAAAAAATTATATAATTCAGCACCAACAAGATTGAGGGGTTTT
1 AATTTTTTGCCACAATACTCAGAAAAAAA-TATATAATTCAACACCAAAAAGATTGACGGGTTTT
*
4607 CACGCTTCTAATATCG-TTTTTTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGAATCAAAT
65 CACGCTTCTAATATCGTTTTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAATCAAAT
* * * * * *
4671 GCTCGT-ATAATAAATCCTTAAATCTAATATGGCTGAGATTTGGTTAGATGAGTATAAATATTTC
130 GCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTC
** * * *
4735 AAGGAAACTTTCTGCTAAAAATCATGCAAAACAAAGCCGAGGCCTCGAAACGCGTTTTTAGTCTA
195 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTTTAGTCCA
* * * *
4800 AAAATCATGATGGTTTGTACTTAGTACACTATTTCGGCTAAAAACTAACCCGAAAAG-TTTTTTT
260 AAAACCGTGAT-G--TG---TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTT
* * * * *
4864 CAA-ATTTTGCCCCAATACTCAGAAAAAATATATAATTCAACACCGAAGAGATTGATAGACTTTT
319 CAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATAGGCTTTT
* * *
4928 CAAGCTTCTAATATCATTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGA
384 CACGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGA
* * * *
4993 TTCAGATGCTCGTAAAAACAAATTCTTAAATACAATTTAGTTGAGATTTGGTTAGATGAATATAG
449 TTCAAATGCTCGTAAAAACAAATTCTTAAAT-CAATGTGGCTGAGATTTGGTTAGATGAATATAG
* * ** * * *
5058 ATATTTCAAGGAGTCTTTTTGGCAAAAATCATGCAAAACTGAGCCGAGGCCCCAAAACGCGTTTT
513 ATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGCGTTTT
* * * **
5123 TAGTCCAAAAACCGT-AGTGGTTAATACACGGTTTCGGCTAAAAACTGACATGAAAA-GTTCTTT
578 TAGTCAAAAAACCGTGA-TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGGTT-TTT
5186 CTC
641 C-C
* * * *
5189 AAATTTTTGCCACAATACACACAAAAAAA-ATATAATTCAACACCAAAAATATTGACGGGTTTTA
1 AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGGGTTTT-
* * *
5253 CACGCTTCTTATATCGTTTTTCAATATTTTTTTTCCGAATTACTTTCTAATTAAATCGAAACAAG
65 CACGCTTCTAATATCG----T---T-TTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAG
* * * * *
5318 ATTCATATGCTCGTAAAAAGAAATCATTAAATCAAATGTGGCTGAGATTTGGTTAGATGAATATA
122 AATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATA
* * * * * *
5383 GATATTTCAAGGAGTCCTTCTACCAAAAATCATTCAAAACTAAGTCGTGGCC-CAAAACGCGTTT
187 GATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTT
* * * *
5447 CTAG-CCCAAAACCGTGATG-GTTAGTACACGATTTCGGCCAATAACTGACCCGAAAAG-TTTTT
252 TTAGTCCAAAAACCGTGATGTGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
* * * * * *
5509 TCCAATTTTTTGCCGCAATACTCACAAAAAAATTATATAATTCAACACAAAAAAGATTGA-CGGG
317 TTCAATTTTTTGCCACAATACTCA-GAAAAAA-TATATAATTCAACACCAAAAAGATTGATAGGC
* *
5573 TTTTCACGCTTCTAATATCGTTTTTC---TTTTTTTTCTGAATTAATTTCTAATTAAATCAAAAC
380 TTTTCACGCTTCTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAAC
* * * * *
5635 AAGAATCAAATGCTCGTAAAAATAAATCCTTAAATCCAATGTGGTTGAGATTTAGTTAGATGAAT
445 AAGATTCAAATGCTCGTAAAAACAAATTCTTAAAT-CAATGTGGCTGAGATTTGGTTAGATGAAT
* **** * *
5700 ATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCAAAATTGTGTCGGGGCCCCGAAACACG
509 ATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGCG
* * * * * *
5765 TTTTTGGTTC-AAAAACCATGATGGTTAGTAGACGATTTCGGCTAAAAACTTACTCGAAAAGTTT
574 TTTTTAG-TCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGGTT
5829 TTTCTC
638 TTTC-C
*
5835 AA-TTTTTGCCCCAATACTCAG-AAAAAATATATAATTCAACACCAAAAAGATTGACGGGCTTTT
1 AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGGG-TTTT
* * *
5898 CACGCTTCTTATATCGTTTTTCATTTTTTTTTTTCGAATTACTTTCTAATTAAATCGAAACAAGA
65 CACGCTTCTAATATCG----T--TTTTTTTTTCT-GAATTAATTTCTAATTAAATCGAAACAAGA
* * * *
5963 TTCATATGCTCGTAAAAAGAAATCCTTAAATCTAATGTGGCTGAGATTTGGTTAGATGAATATAG
123 ATCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
* * *
6028 ATATTTCAAGGAGTCTTTCTGCCAAAAATAATGCAAAACTGAGCC-AGGGCCTTGAAACGCGTTT
188 ATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGA-GGCCTCGAAACGCGTTT
* * * * *
6092 TTAATCCAAAAACTGTGAT-TGTTAGTACACGATTTCGGCTAAAGACTGACCTGAGAAGTTTTTT
252 TTAGTCCAAAAACCGTGATGTGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
* * ** * *
6156 CTCAATTTTTTGCCAAAATACTTTG-AAAAATATATAATTCAACACCAAAAAGATTGA-CGTGTT
317 TTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATAG-GCT
*
6219 TTTCACGCTTCTAATATCATTTTTCAA
381 TTTCACGCTTCTAATATCGTTTTTCAA
6246 TGTGGCTGAC
Statistics
Matches: 3694, Mismatches: 464, Indels: 248
0.84 0.11 0.06
Matches are distributed among these distances:
622 3 0.00
623 2 0.00
624 1 0.00
625 3 0.00
626 2 0.00
628 16 0.00
629 359 0.10
630 28 0.01
631 11 0.00
633 17 0.00
634 39 0.01
635 45 0.01
641 23 0.01
642 56 0.02
643 32 0.01
644 173 0.05
645 430 0.12
646 638 0.17
647 360 0.10
648 563 0.15
649 72 0.02
650 212 0.06
651 40 0.01
652 148 0.04
653 219 0.06
654 52 0.01
655 64 0.02
656 86 0.02
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (642 bp):
AATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAACACCAAAAAGATTGACGGGTTTTC
ACGCTTCTAATATCGTTTTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAATCAAATG
CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCA
AGGAGTCTTTCTGCCAAAAATCATGCAAAACTAAGCCGAGGCCTCGAAACGCGTTTTTAGTCCAA
AAACCGTGATGTGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTTCAATTTT
TTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATAGGCTTTTCACGCTT
CTAATATCGTTTTTCAAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAAT
GCTCGTAAAAACAAATTCTTAAATCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCA
AGGAGTCTTTCTGCCAAAAATCATGCAAAACAAAGTCGTGGCCCCGAAACGCGTTTTTAGTCAAA
AAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGGTTTTTCC
Done.