genome.fa.s13693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013693.1 Corchorus capsularis cultivar CVL-1 contig13714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157826

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--134	32	3.3	32	94	1	178	15	44	27	12	1.82
359--475	32	3.6	31	79	8	135	11	35	38	14	1.83
6040--6134	31	3.1	31	98	0	181	13	22	31	32	1.93
6067--6123	19	3.4	19	64	31	56	14	22	29	33	1.93
14906--14964	31	1.9	31	92	0	100	33	27	23	15	1.95
14968--15053	31	2.8	31	98	0	163	33	29	19	17	1.95
17068--17096	2	14.5	2	100	0	58	51	48	0	0	1.00
23469--23543	33	2.3	33	90	0	123	17	36	32	14	1.90
27542--27568	3	9.0	3	100	0	54	33	33	0	33	1.58
33545--33628	42	2.0	42	90	0	132	35	10	21	32	1.88
34461--34522	27	2.2	28	97	2	117	30	14	3	51	1.58
34469--34517	14	3.6	14	72	5	55	28	14	4	53	1.59
34527--34570	22	2.0	22	100	0	88	63	4	4	27	1.33
42045--42087	12	3.6	12	80	0	50	9	20	13	55	1.66
45381--45680	163	1.8	163	91	1	494	30	19	17	32	1.95
48576--48622	18	2.6	18	74	12	51	46	0	10	42	1.38
55485--55535	26	2.0	26	100	0	102	39	11	17	31	1.86
57016--57163	21	7.0	21	77	11	151	22	31	18	27	1.97
57016--57163	42	3.5	42	94	0	251	22	31	18	27	1.97
70092--70166	33	2.3	33	88	4	107	20	44	24	12	1.85
70118--70170	16	3.2	17	72	17	58	18	41	28	11	1.85
75307--75349	19	2.3	19	95	0	77	51	13	27	6	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76411--76453	22	2.0	22	100	0	86	51	6	18	23	1.70
82108--82154	23	2.0	23	88	8	69	55	4	12	27	1.56
85739--85930	42	4.6	42	89	1	269	22	29	9	37	1.87
85832--85939	21	5.1	21	68	8	76	25	27	10	37	1.88
86556--86637	29	2.8	29	98	0	155	41	32	3	21	1.71
101522--101678	66	2.5	62	87	6	217	34	10	9	45	1.72
101522--101634	22	5.1	22	69	14	63	36	9	8	45	1.69
101526--101666	62	2.2	66	88	7	211	34	10	9	45	1.71
101709--101756	22	2.2	22	84	0	60	29	16	2	52	1.56
101894--101953	22	2.7	22	82	5	77	38	13	13	35	1.84
101920--102173	22	11.8	21	71	13	115	35	16	7	39	1.78
101959--102186	88	2.7	82	71	15	189	35	17	7	40	1.77
102294--102371	22	3.6	22	78	1	86	37	15	7	39	1.76
102268--102411	22	6.6	22	72	10	75	34	13	10	41	1.78
102491--102572	38	2.4	31	71	24	74	60	12	13	13	1.58
102680--102747	31	2.2	32	84	7	86	47	4	13	35	1.63
104289--104323	2	18.0	2	94	5	63	48	0	0	51	1.00
110345--110401	22	2.6	22	81	10	71	36	15	8	38	1.79
110419--110568	22	6.5	22	74	13	90	38	17	10	34	1.83
110743--110780	19	2.0	20	85	15	53	63	2	5	28	1.30
122676--122704	2	14.5	2	100	0	58	51	0	0	48	1.00
134970--135004	11	3.2	11	83	0	52	80	11	2	5	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136129--136175	24	1.9	25	91	4	78	0	38	0	61	0.96
148388--148426	19	2.1	19	90	0	60	15	15	20	48	1.81

Tables:   1

The End!