Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013694.1 Corchorus capsularis cultivar CVL-1 contig13715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130157

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2175--2238
32
2.0
32
87
3
92
53
6
9
31
1.58
2202--2255
29
2.0
27
82
10
65
50
5
14
29
1.66
9286--9328
16
2.6
17
82
10
54
39
41
13
4
1.66
10073--10106
17
1.9
18
88
5
52
20
52
26
0
1.46
10103--10159
16
3.6
16
79
11
64
35
40
17
7
1.77
11018--11052
2
17.5
2
100
0
70
51
0
48
0
1.00
12260--12289
15
2.0
15
100
0
60
46
13
0
40
1.43
17848--17918
29
2.4
29
79
11
74
21
18
14
46
1.83
20302--20350
17
2.9
16
82
8
53
24
20
20
34
1.96
24270--24341
36
2.0
36
88
0
108
30
16
22
30
1.96
32434--32472
2
20.0
2
89
5
62
46
0
0
53
1.00
32841--32865
11
2.3
11
100
0
50
36
16
0
48
1.46
34522--34580
27
2.2
27
78
0
64
32
28
3
35
1.74
37178--37268
47
1.9
47
90
0
146
34
10
10
43
1.75
40130--40205
37
2.1
37
100
0
152
23
7
27
40
1.82
44441--44506
35
1.9
34
90
3
105
45
4
16
33
1.68
46637--46696
26
2.4
24
78
8
57
30
3
1
65
1.19
51697--51724
14
2.0
14
100
0
56
42
21
7
28
1.79
53824--53885
31
2.1
29
81
6
70
20
12
24
41
1.87
54107--54143
2
18.5
2
100
0
74
51
0
0
48
1.00
78272--78318
20
2.3
20
85
3
67
10
8
2
78
1.04
78565--78609
21
2.1
22
88
12
67
20
31
8
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80261--80299
2
19.5
2
100
0
78
51
0
0
48
1.00
90517--90552
17
2.1
17
90
10
56
52
11
22
13
1.72
91951--92002
25
2.1
25
96
0
95
38
5
30
25
1.79
97642--97756
60
1.9
61
92
1
196
40
16
16
26
1.90
98381--98428
6
8.0
6
97
0
69
0
10
50
39
1.37
99093--99177
32
2.7
32
83
0
116
14
41
31
12
1.83
99238--99331
33
2.9
33
85
1
109
11
31
43
12
1.79
99420--99505
32
2.7
32
87
3
120
10
43
38
8
1.69
122303--122328
6
4.3
6
100
0
52
0
30
19
50
1.48
124357--124399
2
21.0
2
95
4
77
48
0
2
48
1.14

Tables:   1

The End!