Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013698.1 Corchorus capsularis cultivar CVL-1 contig13719, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157847

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1125--1189
30
2.1
31
85
2
87
29
16
4
49
1.66
1131--1196
30
2.1
31
83
5
80
33
13
4
48
1.63
1461--1644
22
8.3
22
76
12
83
32
10
19
38
1.85
1505--1608
44
2.3
45
81
8
140
35
12
16
35
1.86
48265--48333
31
2.2
33
81
5
79
50
5
11
31
1.62
48814--48959
73
2.0
73
100
0
292
39
12
20
27
1.88
52389--52464
40
1.9
40
89
5
118
28
11
13
46
1.78
73742--73817
31
2.5
31
71
0
80
21
23
22
32
1.98
75330--75395
2
33.0
2
100
0
132
50
0
50
0
1.00
81639--81872
59
3.9
59
94
0
360
33
18
22
25
1.97
85984--86045
31
2.0
31
90
6
99
48
8
16
27
1.74
96148--96177
6
5.0
6
100
0
60
16
66
16
0
1.25
96148--96186
18
2.2
18
90
0
60
20
64
12
2
1.40
104633--104865
70
3.2
70
84
10
306
36
12
0
49
1.47
104633--104870
78
3.1
76
90
7
328
36
12
0
50
1.47
105043--105257
70
3.2
69
75
17
222
36
11
0
51
1.45
104536--105338
410
2.0
401
93
4
1381
35
11
4
48
1.60
106502--106532
16
1.9
16
93
0
53
35
9
0
54
1.33
106865--107650
190
4.0
192
82
8
874
35
18
12
33
1.89
115031--115084
3
17.7
3
96
3
99
64
0
0
35
0.94
136085--136120
2
18.0
2
100
0
72
50
0
0
50
1.00
148321--148486
87
1.9
87
97
0
314
40
20
13
25
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150042--150222
93
1.9
93
90
0
290
40
11
16
31
1.84
157322--157362
2
20.5
2
100
0
82
0
51
0
48
1.00

Tables:   1

The End!