Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013700.1 Corchorus capsularis cultivar CVL-1 contig13721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94439

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10404--10530
57
2.1
59
91
7
204
33
14
9
42
1.78
12686--12711
11
2.4
11
100
0
52
34
30
19
15
1.93
14507--14564
19
2.9
19
76
5
53
31
17
12
39
1.86
15975--16028
1
54.0
1
92
0
90
0
1
1
96
0.27
28606--28632
12
2.2
12
100
0
54
29
11
7
51
1.64
35585--35616
2
16.0
2
100
0
64
50
0
0
50
1.00
46045--46090
25
1.9
23
95
0
65
26
15
10
47
1.78
60283--60341
28
2.1
28
100
0
118
42
20
13
23
1.88
61854--61910
28
2.0
28
100
0
114
47
17
7
28
1.73
62598--62630
10
3.3
10
100
0
66
24
21
9
45
1.80
63020--63236
115
1.9
115
87
3
321
42
5
25
26
1.76
69170--69368
41
4.8
41
82
11
253
49
8
14
27
1.72
69263--69336
26
3.1
26
66
22
70
43
10
18
27
1.83
69170--69368
87
2.4
79
85
6
263
49
8
14
27
1.72
69476--69549
35
2.1
36
94
5
132
12
0
27
60
1.32
73643--73680
18
2.1
18
95
0
67
52
18
13
15
1.74
73808--73847
4
11.0
4
84
15
52
75
0
25
0
0.81
73808--73847
18
2.2
18
91
8
64
75
0
25
0
0.81
75426--75506
29
2.8
28
86
7
108
25
22
13
38
1.91
76196--76252
29
2.0
28
93
6
98
43
17
17
21
1.88
76196--76275
29
2.8
29
83
7
92
40
13
21
25
1.90
92113--92140
12
2.3
12
100
0
56
42
14
0
42
1.45

Tables:   1

The End!