Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013703.1 Corchorus capsularis cultivar CVL-1 contig13724, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15477
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Found at i:7556 original size:335 final size:329
Alignment explanation
Indices: 5195--8708 Score: 2014
Period size: 334 Copynumber: 10.6 Consensus size: 329
5185 CATAAAGATA
* * * * * * * *
5195 TTTCCTTAATTCTTGGCTAAATTACTCATAAAAAATACATAATTCGATA-T-CAAAAATATTGAA
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATT-TA-ACTCCAAAAA-AATGGA
* * * * * * * *
5258 GGGCTTTTAACGCTTCTAATATTGTTTTTCCTAATTTTTTCCGAATTAATTTCTAGTTAAA-CTT
63 GGACTTTTCACGCTTTTAATATCGTTTTTCAT-A-TTTTTCTGAATTAATTTCTAATTAAATC-G
* *
5322 AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGTCTGGCTGAGATTT
125 AAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAA------TG--TGGCTGAGATTT
* * * * * ***
5387 GGTTAGAT-AA-ATATGGATATTCCAAGGAGTCTTGGCATAAAAAATCATGCAAAACTGAGCCGG
182 GATTAGATGAATATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCGG
* ** * *
5450 ACCCCGAAACGCGTTTTTAGCCGAAAACCGTGA----T--TACACGATTTGGGCT-AAATTTTGC
247 -GCCCGAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGC
* *
5508 AAAAATTGATTCA-AAAGATT
311 AAAAA-TGA-CCAGAAATATT
* * ** * * * * * *
5528 TCTCATTGATTTCTAG-TGAAAATAATCATAAAA-AGCATATAATTCAA-TGCCAAAAAAATTGA
1 TTTCCTCAATTTTTGGCT-AAAATACTCATAAAATA-TATATAATTTAACT-CCAAAAAAA-TGG
* * * ** * ** * *
5590 AAGCCTTTTTTCACGCTTCTAATATTATTTTTTTTCTATTTTATTTCAAAATTAATTTATGATT-
62 AGGAC--TTTTCACGCTT-T--TAATATCGTTTTTC-ATATT-TTTCTGAATTAATTTCTAATTA
* ** * * * * * *
5654 AATCGAAACAAGATTTAGAAACTCATACAAACAAATCCTTAAATACAATGTGGTTGAGATTTGGT
120 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGAT
* * * * * *
5719 TAGATAAATATATATATATATATATATATTAAGGAGTCTTGCCACCAAAAATCATGCAAAACTGA
185 TAG----AT-GA-ATATATAGATAT-T-TCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGA
* * * * *
5784 -CCTAGAGCCCCGGAACACGTTTTTAACAAAAAAAAAAAACCATGATGG-TA-T--ACGATTTCG
242 GCC--G-GGCCCGAAACGCGTTTTTAGC------AAAAAACCGTGATGGTTAGTACACGATTTCG
* * *
5844 GCTAAAATTTTGCGAAAATTGACCTGAAATATT
298 ACTAAAATTTTGC-AAAAATGACCAGAAATATT
* * * * * * * *
5877 TTTTCTCAATTTTTAGCCACAATACTCATAAAAAATATATAATTCAACGT-CAAAAATATTGAAG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAAC-TCCAAAAA-AATGGAG
* * * * * * * * * * * *
5941 GGCTTCTCACGCTTCTAATATCATTTTTCTTTCTTTTTTTCAAACTAATATATAATTAAATTGAA
64 GACTTTTCACGCTTTTAATATCGTTTTTC-ATATTTTTCT-GAATTAATTTCTAATTAAATCGAA
* * * *
6006 ACATGATTCAAATGCTCGTAAAAACAAATCATTAAATCCAATGTGGCTAAGATTT-ACTTAGATG
127 ACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGA-TTAGATG
* * * * * ** * * *
6070 AATATA-A-ATTTTTCAAGGAGTGTTGCCACTGAAAATCATGC-AAACTGATCCGTG-CCAAGAA
191 AATATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCGGGCCCGA-AA
* * * *
6131 CGCGTTTTGAGCCAAAAAACCGTGATGG-TAG-ACA--ATTTCGGCTAAAATTTTACAAAAAATT
255 CGCGTTTTTAG-CAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGC-AAAAATG
6192 ATCC-GAAATATT
318 A-CCAGAAATATT
* * * * * * *
6204 TTTCCTCAATTTTTAG-TCACAATACTCATAGAATATATATAATTAAAATCCAAGAAGATTGGAG
1 TTTCCTCAATTTTTGGCT-AAAATACTCATAAAATATATATAATTTAACTCCAA-AAAAATGGAG
*
6268 GACTCTTCACGCTTTTAATAT-GATTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAA
64 GACTTTTCACGCTTTTAATATCG-TTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAA
* * * ** * *
6332 TAAGTTTCAGATGCTCGTAAAAACAAATCCTTAAATTTAATGTGGATGAGACTTGATTAGATG-A
128 CAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAA
* * * * *
6396 -ATATAGATATTCCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTAAACCGGGGTCTCGAAAC
193 TATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCC-GGG-CCCGAAAC
* * * * * *
6460 ACGTTTTTATCCAAAAACCGTAATGGTTAGTACACGATTTCGACTAAAATTTTACAAAGATGATC
256 GCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAAATGA-C
6525 C-GAAAGT-TT
320 CAGAAA-TATT
* *
6534 TTTCCATCAATTTTAGG-TATAAATACTCATAACATATATATAATTTAACAT--AAAAAAGATTG
1 TTTCC-TCAATTTTTGGCTA-AAATACTCATAAAATATATATAATTTAAC-TCCAAAAAA-A-TG
* *
6596 GAGGACTTTTCATGCTTTTTATAATCGTTTTTCATATTTTTCTG-----A-----AATTAAATCG
61 GAGGACTTTTCACGCTTTTAAT-ATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCG
* * *
6651 AAACAAGATTCAGATGCTCGTAAAAACAAAT-TCTTAAATCCAATATAGCTGAGATTTGGTTAGA
125 AAACAAGATTCAGATGCTCGTAAAAACAAATCT-TTAAATCCAATGTGGCTGAGATTTGATTAGA
* * * * * * * *
6715 T-AA-ATATGGATATCTCAAAGAGTCTTGACGTCAAAAATCATGCAAAATTTAGTCGGGGTCCCG
189 TGAATATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAG-CCGGG-CCCG
* * * * * * * * *
6778 GAACACGATTTTAGCCAAAAACCGTGATGATTATTACATGATTTCGACTAGAATTTTGCAAAATT
252 AAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAAAT
*
6843 GACTCA-AAAGT-TA
317 GAC-CAGAAA-TATT
* * * * * * *
6856 TTTCCTCAATTTTTAGCCACAATACTCATAAAA-ATTATATAATTCAA-TGCCAATAAGATTGAA
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATA-TATATAATTTAACT-CCAA-AAAAATGGA
* * * *
6919 GGGCTTTTCATGCAATTCTAATATCATTTTTCCTATTATTTTTC-GAATTAATTTCTAATTAAAT
63 GGACTTTTCACGC--TTTTAATATCGTTTTT-C-A-TATTTTTCTGAATTAATTTCTAATTAAAT
* * *** * * * *
6983 CGAAACATGATTCAGATGCTTGT-TTTACAAATCCTTAAATCC-ACGTGGATGAGATTTGATTAC
123 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAG
* * * * * *
7046 AT-TA-ATATAGATATTTCAAGGAGTC-C-CCGTGCAAAAATCATGCAACATTGAACCGGGACCC
188 ATGAATATATAGATATTTCAAGGAGTCTCGACG-CCAAAAATCATGCAAAACTGAGCCGGG-CCC
* * * * * * *
7107 CATAACGCGGTTTTAGCAAAAAAACTGCGAT--TTCG-ACTAACGTGATTTCGACTAATATCTTG
251 GA-AACGCGTTTTTAGC-AAAAAACCGTGATGGTTAGTAC--AC--GATTTCGACTAAAATTTTG
*
7169 CAAAAATTGACCAGAAATAGT
310 CAAAAA-TGACCAGAAATATT
* *
7190 TTTCCTCAATTTTTGTCTAAAATACTCATAAAATATATATAATTTAACTCCAAAAATAATAGAGG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACTCCAAAAA-AATGGAGG
* * *
7255 ACTTTTCACGCTTTTAATATCTTTTTTTATATTTTTCTGAATTAATTTTTAATTAAATCGAAACA
65 ACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACA
* * * * *
7320 GGATTCAGATGCTCGTTAAAACAAATCTTTAAGTGCAATGTGGTTGAGATTTGATTAGATGAATA
130 AGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATA
* * * * * **
7385 TATATATATTTCAAGGAGCCTCGATGCCAAAAATCTTGCAAAAGTGAGTTGAGGCCCTGAAACGC
195 TATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCG-GGCCC-GAAACGC
* * * *
7450 GTTTTTAGCAAAAAAAACCGTGATGGTTAGTATACCATTTCGCCT-AAATTTTGTAAAGAATGAC
258 GTTTTTAGC--AAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAA-AATGAC
*
7514 CAGAAATTTTT
320 CAGAAA-TATT
* * *
7525 TTTTCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACACCAAAAAAAGTGTAGG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACTCCAAAAAAA-TGGAGG
* * * *
7590 ACTTTTCATGCTTTTAATAACGTTTTTCATGTTTTTTTGAATTAATTTCTAATTAAATCGAAACA
65 ACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACA
* * * ** * ** * * * * *
7655 TGATTCAGATGCTTGTAAAAAATAAAAATTTATATGTAATATGGCTAAAATTTTATTAGAT-TA-
130 AGATTCAGATGCTCGT-AAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAAT
* * * * * *
7718 ATATAGTTATTTCAAGGAGTATC-AGCGCCAAAAATCATGCCAAACAGAGCTGATGCCCCGAAAC
194 ATATAGATATTTCAAGGAGTCTCGA-CGCCAAAAATCATGCAAAACTGAGCCG--GGCCCGAAAC
* ** * *
7782 GCGTTTTTAGCCAAAAATTGTGATGGTTAGTACACTATTTTGACTAAAATTTTGCAAAAAAAAAA
256 GCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGC-----AAAAA
*
7847 TGACTCA-AAAAATT
316 TGAC-CAGAAATATT
* * * * * ***
7861 TTTCCTCAAATTTTGGATAAATTACTCACAAAGTATATATAATTTAACGGGAAAAAAAGATCGGA
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAAC-TCCAAAAAA-AT-GGA
* **
7926 GGACTTTTCAAGCTTTTAATATCGTTTTTCATATTTTT-TGTTTTAATTTCTAATTAAATCGAAA
63 GGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAA
* * * *
7990 CAAGATTTAGATGCTTGTAAAAACAAATTTTTAAATCCAATGCGGCTGAGATTTGATTAGATG-A
128 CAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAA
* * * ** * * * * *
8054 -ATATAGATATCTCAAGAAGTCTTGGTGCAAAAAATCATGCATAACTGAGTCAGGGCCCCAGGAC
193 TATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAG-CCGGGCCCGA-AAC
* ** *
8118 GC-TTTTTATTC-AAAAA---T--T-GTTA-TA-ATTAATTTC-AGCTAAAATTTTGTAAAAATT
256 GCGTTTTTA-GCAAAAAACCGTGATGGTTAGTACA-CGATTTCGA-CTAAAATTTTGCAAAAA-T
* * *
8172 GACCCGAAAGATA
317 GACCAGAAATATT
* * * * *
8185 TTTCCTCAATTTTTGACTAAAATACTCATAAAA-ATATATAACTCAA-TGCCAAAAAGATTGAAG
1 TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACT-CCAAAAA-AATGGAG
* ** * * **
8248 GGCTTTGGACG-TTTCTAATATTGTTTTTCCTA-TTTTCCAAATTAATTTCTAATTAAATCGAAA
64 GACTTTTCACGCTTT-TAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAA
* * * **
8311 TAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CTATGGTGGGAGAGATTTGATTAGATGA
128 CAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAAT-GTGGCTGAGATTTGATTAGATGA
* * * * * * * *
8375 A-CT-TAGATATTTCAAGTAGTTTCGGA-GCCATAAATCATGCAAAATTGAG-TGGTTCCCGGAA
192 ATATATAGATATTTCAAGGAGTCTC-GACGCCAAAAATCATGCAAAACTGAGCCGG-GCCCGAAA
** * * * * *
8436 CATGTTTATTTAGCCAAAAACCGTGATGATTTGTTAGTGCACTATTTCAACTAAAATTTTACAAA
255 CGCG-TT-TTTAGCAAAAAACCGTGATG----GTTAGTACACGATTTCGACTAAAATTTTGCAAA
*
8501 AAGTGA-CACGAAAGATT
314 AA-TGACCA-GAAATATT
* * * ** *
8518 TCTT-CTCGATTTTTGGCTAAAATACTCACAAAA-ATATATAATTCAACGACAAAAAGATTGGAG
1 T-TTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACTCCAAAAA-AATGGAG
* * *** * ** * *
8581 TG-CTTTTTACACTAAAAATAACGCATTTCTTATTTTTTCTAAATTAATTTCT-ATTAAATCGAA
64 -GACTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAA
* * * ** * *
8644 ACAAGATTCACATGCTCGTAATAACAAAT-TCTTAAACCCAATGTTTCTGAGATTTGGTTCGATG
127 ACAAGATTCAGATGCTCGTAAAAACAAATCT-TTAAATCCAATGTGGCTGAGATTTGATTAGATG
8708 A
191 A
8709 TGTAAAGTAT
Statistics
Matches: 2493, Mismatches: 499, Indels: 377
0.74 0.15 0.11
Matches are distributed among these distances:
319 5 0.00
320 14 0.01
321 183 0.07
322 208 0.08
323 31 0.01
324 40 0.02
325 106 0.04
326 17 0.01
327 141 0.06
328 34 0.01
329 41 0.02
330 76 0.03
331 124 0.05
332 147 0.06
333 197 0.08
334 262 0.11
335 257 0.10
336 170 0.07
337 111 0.04
338 79 0.03
339 39 0.02
340 19 0.01
341 3 0.00
343 3 0.00
344 28 0.01
345 54 0.02
346 9 0.00
347 10 0.00
348 12 0.00
349 65 0.03
350 7 0.00
351 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (329 bp):
TTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTTAACTCCAAAAAAATGGAGGA
CTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAA
GATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATAT
ATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCGGGCCCGAAACGCGTT
TTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAATTTTGCAAAAATGACCAGAAA
TATT
Found at i:9771 original size:86 final size:84
Alignment explanation
Indices: 9642--9802 Score: 268
Period size: 86 Copynumber: 1.9 Consensus size: 84
9632 ATTATTATTT
*
9642 AATATCTCCTAAATCTCCCACAATCTGGCAAGATTTAGAAAATATTCTCATTACTATTAAATCTT
1 AATATCTCCTAAACCTCCCACAATCTGGCAAGATTTAGAAAATATTCTCATTACTATTAAA-CTT
9707 TATTATTTATTTATTTCTTAA
65 TATT-TTTATTTATTTCTTAA
* * *
9728 AATATCTCCTAAACCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCATTATTATTCAACTTT
1 AATATCTCCTAAACCTCCCACAATCTGGCAAGATTTAGAAAATATTCTCATTACTATTAAACTTT
9793 ATTTTTATTT
66 ATTTTTATTT
9803 TATATGAACC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
84 7 0.10
85 7 0.10
86 57 0.80
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43
Consensus pattern (84 bp):
AATATCTCCTAAACCTCCCACAATCTGGCAAGATTTAGAAAATATTCTCATTACTATTAAACTTT
ATTTTTATTTATTTCTTAA
Found at i:11121 original size:109 final size:109
Alignment explanation
Indices: 10969--11264 Score: 459
Period size: 109 Copynumber: 2.7 Consensus size: 109
10959 TAAATTAAAA
** *
10969 TGGTAAAAATAAAAAAAATTATATAAAATATT-GAATTTAATTAAATGAAAATAGAGTTTTTAGT
1 TGGTAAAAAT-AAAGTAATTATA-AAGATATTAG-ATTTAATTAAATGAAAATAGAGTTTTTAGT
11033 AGAATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
63 AGAATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
11080 TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
1 TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
11145 ATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
66 ATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
* * *
11189 TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAATTTAATTGAAGAAAAATAGAATTTCTA
1 TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAA-TTAA---ATG-AAAATAGAGTTTTTA
11254 GTAGAATAAAA
61 GTAGAATAAAA
11265 CTATAATAGT
Statistics
Matches: 173, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
109 122 0.71
110 15 0.09
111 10 0.06
113 2 0.01
114 24 0.14
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (109 bp):
TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
ATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
Found at i:11976 original size:2 final size:2
Alignment explanation
Indices: 11969--11996 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11959 ACCTTCGTCC
11969 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11997 CTAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12548 original size:16 final size:16
Alignment explanation
Indices: 12520--12553 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
12510 ACATCAGTTG
12520 AATACAAACTCTCTCA
1 AATACAAACTCTCTCA
12536 AATACCAAA-TCTCTCA
1 AATA-CAAACTCTCTCA
12552 AA
1 AA
12554 ATTTAGTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (16 bp):
AATACAAACTCTCTCA
Found at i:13726 original size:37 final size:37
Alignment explanation
Indices: 13685--13764 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
13675 GTTGATTCCT
*
13685 TTCTTAATTTCCAAATTGAAATTGAAAAAGATGAAGC
1 TTCTTAATTTCCAAATTGAAATTAAAAAAGATGAAGC
*
13722 TTCTTGATTTCCAAATTGAAATTAAAAAAGATGAAGC
1 TTCTTAATTTCCAAATTGAAATTAAAAAAGATGAAGC
13759 TTCTTA
1 TTCTTA
13765 GTATACTACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (37 bp):
TTCTTAATTTCCAAATTGAAATTAAAAAAGATGAAGC
Done.