Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013707.1 Corchorus capsularis cultivar CVL-1 contig13728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40972

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11479--11582
53
2.0
53
88
3
156
34
25
21
19
1.96
11533--11630
31
3.2
31
86
2
108
34
23
21
20
1.96
14911--15051
60
2.3
61
86
2
196
35
14
19
30
1.92
14911--15069
60
2.7
60
80
8
191
37
14
18
28
1.91
15117--15229
58
1.9
59
89
3
174
29
17
15
37
1.91
15116--15250
58
2.3
59
84
2
173
29
18
14
37
1.90
21707--21768
30
2.1
30
93
0
106
45
9
0
45
1.36
22190--22258
22
3.1
21
81
8
68
40
14
11
33
1.82
22247--22326
23
3.5
23
86
6
110
40
12
6
41
1.68
22331--22516
22
8.7
22
69
17
108
37
14
7
40
1.74
22531--22673
44
3.2
44
70
11
114
31
13
9
45
1.76
22561--22746
22
8.4
22
71
12
121
32
15
10
41
1.80
22814--22919
44
2.4
44
78
7
108
34
20
8
35
1.83
22814--22906
22
4.2
20
75
13
69
35
21
8
34
1.84
22961--23091
44
3.0
43
84
6
120
38
16
11
34
1.84
22962--23095
22
6.0
22
74
14
105
38
16
11
33
1.84
23438--23481
20
2.2
20
88
8
63
36
0
0
63
0.95
24198--24229
14
2.3
14
94
0
55
50
15
18
15
1.79
34334--34392
30
2.0
31
90
6
95
33
16
13
35
1.88
38835--38873
20
2.0
19
85
5
51
66
12
10
10
1.44

Tables:   1

The End!