Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013711.1 Corchorus capsularis cultivar CVL-1 contig13732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48335

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211--246
12
3.0
12
91
0
54
41
8
0
50
1.33
329--370
20
2.1
20
86
8
59
50
19
7
23
1.72
1203--1230
2
14.0
2
100
0
56
50
0
0
50
1.00
7706--7730
2
12.5
2
100
0
50
52
0
0
48
1.00
8668--8713
22
2.1
22
100
0
92
32
13
0
54
1.39
8979--9137
59
2.7
60
82
5
180
32
17
13
36
1.89
8979--9078
31
3.3
31
70
8
89
28
18
16
38
1.91
32633--32671
20
2.0
20
89
0
60
56
7
7
28
1.55
32871--32906
16
2.2
16
100
0
72
38
16
11
33
1.84
34543--34576
2
17.0
2
93
0
59
47
0
0
52
1.00
37930--37969
1
40.0
1
100
0
80
0
0
0
100
0.00

Tables:   1

The End!