Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013712.1 Corchorus capsularis cultivar CVL-1 contig13733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21324

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
761--805
23
2.0
23
95
0
81
51
0
8
40
1.33
762--811
23
2.2
23
88
0
73
52
4
10
34
1.54
1427--1479
25
2.1
26
92
3
90
35
16
11
35
1.85
2251--2290
16
2.4
16
91
8
62
0
12
0
87
0.54
2864--2916
25
2.1
25
96
0
97
30
3
13
52
1.57
8026--8071
15
3.1
15
87
6
58
39
17
15
28
1.90
8073--8286
60
3.6
59
96
1
392
32
13
11
42
1.80
8308--8364
24
2.3
24
84
3
78
17
24
3
54
1.59
10395--10421
13
2.1
13
100
0
54
44
14
11
29
1.80
10568--10613
15
3.1
15
87
6
58
39
17
15
28
1.90
10599--10725
60
2.3
50
72
22
137
33
15
12
38
1.85
10615--10954
60
5.6
60
91
3
545
33
13
11
41
1.80
10622--10954
123
2.7
123
94
0
587
33
13
10
42
1.79
10981--11032
24
2.2
24
85
0
68
19
19
5
55
1.62
11411--11436
12
2.2
12
100
0
52
38
0
11
50
1.39
11689--11739
22
2.6
18
80
20
50
17
15
9
56
1.65
16626--16725
16
6.6
16
73
19
63
30
33
15
22
1.94
16626--16767
58
2.4
58
92
0
239
30
33
12
22
1.91
16700--16800
42
2.4
42
85
6
159
32
34
10
21
1.88
16671--16793
16
8.4
16
65
23
56
31
37
9
21
1.86
18366--18406
22
1.9
22
85
14
59
29
2
14
53
1.54
20042--20092
17
3.1
17
72
16
52
60
21
1
15
1.44

Tables:   1

The End!