Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013715.1 Corchorus capsularis cultivar CVL-1 contig13736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98751

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
999--1069
29
2.4
29
80
2
79
39
25
12
22
1.89
1675--1741
2
34.5
2
86
5
93
50
1
2
44
1.26
3953--3977
13
1.9
13
100
0
50
84
0
16
0
0.63
6172--6254
3
27.7
3
92
0
67
44
1
33
20
1.59
11293--11972
348
2.0
348
89
1
1049
34
13
28
23
1.92
16756--16834
32
2.6
32
92
7
130
22
11
7
58
1.58
17048--17074
12
2.2
12
100
0
54
85
7
0
7
0.75
29429--29529
20
5.2
20
63
22
54
42
7
5
43
1.58
29415--29493
39
2.0
39
97
0
149
50
12
2
34
1.54
29859--29895
18
2.1
19
90
10
60
32
0
13
54
1.40
30379--30418
20
2.0
21
85
5
55
30
5
17
47
1.69
32374--32418
18
2.5
18
86
10
65
20
6
8
64
1.44
33149--33387
121
2.0
121
94
0
424
32
20
16
30
1.95
33908--34399
167
3.0
164
83
5
607
36
15
15
31
1.90
35049--35091
18
2.4
18
92
7
70
41
0
2
55
1.12
36255--36350
32
3.2
31
73
8
90
51
25
5
18
1.67
38653--38776
16
7.6
16
81
7
115
11
20
35
33
1.88
38653--38775
32
3.8
32
82
5
140
10
20
35
33
1.87
38651--38753
48
2.2
47
87
6
154
9
19
36
33
1.85
39123--39159
13
2.8
13
87
4
56
18
13
0
67
1.23
39306--39348
16
2.7
16
88
0
59
13
16
37
32
1.88
39318--39360
16
2.7
16
88
0
59
13
16
32
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46168--46318
77
2.0
77
95
0
275
39
15
13
31
1.86
49403--50076
336
2.0
336
92
0
1132
34
18
24
22
1.96
54183--54226
20
2.3
20
84
7
56
52
9
2
36
1.46
54189--54226
20
1.9
19
89
5
58
50
10
2
36
1.51
56131--56156
2
13.0
2
100
0
52
50
0
0
50
1.00
62001--62049
25
2.0
25
95
0
89
36
12
16
34
1.86
62533--62621
22
4.1
22
70
13
76
44
13
11
30
1.78
62590--62705
56
2.0
58
83
8
148
41
8
17
32
1.80
62685--62802
22
5.4
22
84
6
150
42
13
14
29
1.84
62685--62928
44
5.8
44
74
13
194
42
13
14
30
1.83
62828--62928
21
4.7
23
73
13
83
41
14
14
28
1.86
62821--62926
43
2.5
43
78
7
110
41
14
16
28
1.86
63270--63356
22
4.0
22
71
11
79
45
10
14
28
1.78
64266--64301
17
2.1
17
100
0
72
61
5
5
27
1.41
66660--66688
2
14.5
2
100
0
58
48
51
0
0
1.00
71398--71436
20
2.0
20
94
0
69
7
12
12
66
1.43
72697--72741
11
4.2
11
83
11
58
80
17
2
0
0.82
72697--72737
6
7.0
6
78
15
50
80
17
2
0
0.82
80884--80954
37
1.9
37
91
0
115
28
18
21
32
1.96
82962--83078
56
2.0
58
86
6
166
42
12
17
27
1.85
87403--87432
15
2.0
15
100
0
60
26
13
20
40
1.89
92410--92444
7
5.0
7
100
0
70
14
14
28
42
1.84

Tables:   1

The End!