Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013718.1 Corchorus capsularis cultivar CVL-1 contig13739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37211

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--48
2
23.0
2
100
0
92
0
50
0
50
1.00
1288--1341
18
3.3
18
66
28
57
53
3
5
37
1.42
5733--5772
21
2.0
20
85
5
53
47
7
17
27
1.74
5885--5933
20
2.4
20
86
10
64
51
0
4
44
1.20
6104--6196
29
3.0
29
69
25
73
18
5
15
61
1.52
6371--6427
25
2.2
25
90
3
87
8
24
8
57
1.57
7052--7080
6
4.8
6
100
0
58
51
0
13
34
1.42
12397--12434
19
2.0
20
85
15
53
28
5
2
63
1.30
13181--13264
42
2.0
42
90
0
132
35
11
20
32
1.89
22486--22524
20
2.0
20
85
10
53
58
0
7
33
1.26
24033--24060
2
14.0
2
100
0
56
50
0
0
50
1.00
25538--25609
27
2.6
27
80
6
74
13
13
22
50
1.77
28693--28717
7
3.6
7
100
0
50
44
0
24
32
1.54
29093--29164
27
2.7
26
83
12
92
55
4
22
18
1.59
29188--29555
22
17.2
22
75
12
231
55
5
20
17
1.63
29494--29563
29
2.4
29
76
4
70
58
7
18
15
1.59
29463--29555
7
12.9
7
69
6
51
61
6
18
13
1.53
29522--29565
14
3.1
14
90
3
61
61
2
20
15
1.45
29523--29648
47
2.6
48
79
9
139
61
4
19
15
1.51
29540--29731
82
2.4
81
84
3
233
61
4
19
14
1.48
29629--29737
7
16.3
7
71
14
79
61
2
21
14
1.45
29628--29719
46
2.0
47
97
2
177
61
3
19
15
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29623--29739
53
2.3
53
87
10
156
60
3
20
15
1.49
29758--29812
27
2.0
28
92
3
94
58
3
21
16
1.54
29760--29849
37
2.4
37
82
10
112
58
2
23
15
1.48
29750--29872
65
1.9
65
88
6
187
53
2
24
19
1.57
29797--29895
27
3.6
27
75
6
110
54
2
24
19
1.54
29793--29895
54
1.9
53
87
2
143
55
1
24
18
1.53
29899--29980
19
3.9
19
69
23
58
47
4
26
20
1.70
29876--30002
46
2.7
46
96
1
227
49
4
23
22
1.68
29964--30029
27
2.4
27
87
5
98
53
4
19
22
1.64
34304--34348
24
1.9
24
95
4
83
42
8
13
35
1.75

Tables:   1

The End!