Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013722.1 Corchorus capsularis cultivar CVL-1 contig13743, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76653

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--95
22
2.1
22
84
7
60
57
2
12
27
1.47
748--831
10
8.7
10
72
13
52
54
0
3
41
1.17
784--849
12
5.4
12
76
18
57
45
0
3
51
1.16
785--854
26
2.6
28
82
11
83
45
0
2
51
1.16
8234--8354
60
2.0
60
93
0
206
28
17
22
32
1.96
32398--32432
15
2.3
15
90
0
52
48
11
11
28
1.74
32437--32812
76
4.9
76
87
5
510
37
14
21
26
1.92
32449--32813
153
2.4
151
90
5
565
38
12
21
26
1.90
32697--32941
122
2.0
121
90
2
384
40
12
19
27
1.87
32901--33494
92
6.6
91
81
9
677
36
15
23
24
1.93
33221--33503
84
3.3
84
83
9
336
36
14
24
25
1.93
32896--33503
176
3.4
173
84
9
730
36
15
23
24
1.93
33458--33592
71
1.9
71
89
0
207
35
15
22
25
1.94
33560--33774
76
2.8
76
94
0
367
38
12
22
26
1.89
33652--33903
130
1.9
129
85
4
346
41
11
20
26
1.87
33912--34144
64
3.7
64
82
6
294
26
22
24
26
2.00
34073--34227
83
1.9
83
88
0
238
25
21
23
28
1.99
34156--34291
64
2.1
64
90
0
209
26
19
25
28
1.99
34000--34488
147
3.3
147
95
0
879
25
20
24
29
1.99
34220--34374
83
1.9
83
93
0
265
25
20
23
30
1.99
34303--34438
64
2.1
64
87
0
191
26
21
24
27
1.99
39662--39772
32
3.5
32
92
0
177
16
33
32
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48009--48065
28
2.1
27
83
6
71
59
12
8
19
1.58
50404--50541
65
2.1
65
97
1
260
53
22
0
23
1.51
51542--51688
72
2.1
70
86
5
199
35
12
0
51
1.40
53155--53886
367
2.0
365
96
0
1338
30
10
23
35
1.89
57893--58024
64
2.1
64
91
0
210
26
10
28
34
1.90
61777--61808
16
2.1
15
94
5
55
21
0
0
78
0.76
66713--66765
23
2.3
23
93
3
90
35
26
15
22
1.93
71495--71559
32
2.0
32
100
0
130
30
12
13
43
1.81
75154--75184
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!