Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013723.1 Corchorus capsularis cultivar CVL-1 contig13744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8435

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1219--1265
18
2.4
19
79
17
51
68
4
2
25
1.19
2750--2806
22
2.6
22
86
5
71
35
10
14
40
1.80
2912--2962
22
2.3
23
82
3
59
37
15
13
33
1.87
3018--3073
22
2.5
22
82
0
67
37
14
12
35
1.84
3040--3140
45
2.3
45
82
5
116
35
14
8
40
1.78
3040--3286
22
11.5
22
69
13
120
34
14
8
41
1.77
3461--3561
21
4.6
22
74
12
91
30
13
10
44
1.79
3582--3703
44
2.8
44
76
8
117
40
18
5
35
1.75
3582--3705
22
5.7
20
72
13
86
39
19
5
35
1.75
3759--3964
22
9.3
22
79
5
116
38
17
10
33
1.85
3759--3966
44
4.7
44
78
8
154
38
18
10
32
1.85
3814--3967
44
3.5
44
82
1
175
37
16
11
35
1.85
3759--3966
66
3.1
66
80
9
208
38
18
10
32
1.85
4137--4174
19
2.0
20
85
15
53
63
2
5
28
1.30
5020--5056
19
1.9
19
88
0
56
62
2
5
29
1.31
7210--7243
3
11.3
3
100
0
68
67
0
0
32
0.91
7239--7270
4
7.8
4
93
6
55
71
0
0
28
0.86
7215--7270
9
6.3
9
88
12
57
69
0
0
30
0.89

Tables:   1

The End!