Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013724.1 Corchorus capsularis cultivar CVL-1 contig13745, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37862

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8425--8483
31
1.9
31
89
6
93
32
13
3
50
1.58
8798--8840
19
2.1
21
84
16
56
27
6
2
62
1.33
8998--9137
22
6.3
22
75
9
113
32
9
19
38
1.83
9239--9286
22
2.2
22
84
0
60
33
4
20
41
1.72
9249--9583
22
15.0
22
69
13
132
40
8
16
34
1.79
9388--9578
44
4.4
45
74
7
155
42
8
13
35
1.75
9662--9802
44
3.3
42
75
15
121
41
10
14
33
1.80
9681--10107
22
19.7
22
70
11
154
37
10
16
35
1.83
9873--9938
23
2.9
23
83
0
87
37
7
19
34
1.80
10046--10138
44
2.1
44
82
6
107
32
13
17
36
1.89
10068--10151
44
1.9
44
85
4
116
35
14
15
34
1.88
10185--10240
22
2.5
22
79
0
67
42
8
8
39
1.68
10680--10706
1
27.0
1
100
0
54
0
0
0
100
0.00
14511--14640
65
2.0
65
100
0
260
23
18
12
46
1.82
15286--15326
21
2.0
21
85
9
57
41
21
12
24
1.87
19156--19180
12
2.1
12
100
0
50
16
8
52
24
1.70
19272--19313
19
2.3
18
84
8
57
35
2
0
61
1.09
24105--24129
13
1.9
13
100
0
50
0
16
16
68
1.22
26662--26700
17
2.2
18
90
4
62
53
5
17
23
1.63
26709--26883
73
2.4
73
93
0
287
32
20
20
27
1.97
28866--28909
15
2.9
15
75
0
52
25
36
27
11
1.90
29854--29883
15
1.9
16
93
6
53
40
16
23
20
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29952--29982
10
3.0
10
95
4
53
87
0
12
0
0.55
29952--29981
16
1.9
15
93
6
51
90
0
10
0
0.47
33909--33956
3
17.3
3
83
16
68
64
0
0
35
0.94
33913--33957
5
8.4
5
97
2
63
62
0
0
37
0.96
37532--37565
16
2.1
17
94
5
61
32
17
0
50
1.47
37653--37858
78
2.6
78
92
3
326
36
14
0
48
1.48

Tables:   1

The End!