Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013726.1 Corchorus capsularis cultivar CVL-1 contig13747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100368

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--34
15
1.9
16
93
6
53
53
3
0
43
1.17
1157--1200
21
2.2
19
84
8
52
27
2
4
65
1.23
11721--11786
31
2.1
31
88
5
98
27
22
4
45
1.72
12384--12523
22
6.3
22
73
9
86
32
7
19
40
1.80
12385--12471
44
2.0
43
82
6
104
36
8
18
36
1.80
12634--12942
22
14.0
21
70
18
141
41
10
15
33
1.80
12689--12942
22
11.6
23
74
12
153
41
9
14
33
1.79
12750--12939
44
4.4
44
76
4
181
42
9
13
34
1.77
13029--13101
19
3.6
20
85
10
87
45
10
13
30
1.78
13029--13549
22
24.0
22
69
14
165
38
10
16
35
1.83
13411--13496
45
1.9
45
83
4
111
33
11
16
38
1.85
13029--13630
44
13.8
44
69
13
266
39
10
15
35
1.82
14864--14893
15
1.9
16
93
6
53
43
0
3
53
1.17
15245--17757
332
7.5
330
74
9
1751
35
14
13
36
1.86
15564--16839
671
1.9
669
82
5
1599
35
14
12
37
1.84
16907--16932
2
13.0
2
100
0
52
50
0
0
50
1.00
18112--19239
327
3.5
327
76
8
862
33
13
15
36
1.88
19572--19598
6
4.5
6
100
0
54
55
14
0
29
1.40
19595--19629
13
2.7
13
90
0
61
60
8
8
22
1.54
26272--26356
43
2.0
43
83
4
109
54
9
10
25
1.65
26704--26730
6
4.5
6
100
0
54
55
14
0
29
1.40
26727--26774
13
3.7
13
94
0
87
60
8
8
22
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27684--27708
10
2.5
10
100
0
50
24
8
20
48
1.76
31186--31220
16
2.2
16
100
0
70
11
25
17
45
1.81
44687--44735
6
7.5
6
80
15
53
6
28
2
63
1.30
47431--47461
8
3.9
8
100
0
62
12
12
12
61
1.58
51048--51081
4
8.5
4
93
0
59
73
2
0
23
0.97
51372--51465
49
1.9
48
91
2
152
50
15
14
19
1.79
51685--51850
84
2.0
83
83
4
208
30
15
17
36
1.91
71642--71674
16
2.1
16
100
0
66
63
24
0
12
1.28
72623--72661
21
1.9
19
90
10
60
35
15
2
46
1.60
87225--87249
3
8.3
3
100
0
50
68
0
0
32
0.90
95492--95525
18
1.9
18
88
5
52
50
2
5
41
1.42
99138--99174
15
2.2
18
81
18
53
32
2
2
62
1.23
99142--99175
17
2.1
15
89
10
50
32
2
2
61
1.26
100140--100186
2
23.5
2
100
0
94
48
0
0
51
1.00

Tables:   1

The End!