genome.fa.s13729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013729.1 Corchorus capsularis cultivar CVL-1 contig13750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161088

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13959--13988	14	2.1	14	100	0	60	16	6	30	46	1.73
20631--20735	51	2.0	52	94	1	185	25	13	24	36	1.92
21583--21621	21	1.9	19	85	10	51	33	7	15	43	1.75
21870--21906	6	6.3	6	93	6	67	35	16	0	48	1.46
22489--22608	59	2.0	59	98	0	231	35	10	20	34	1.87
22726--22756	2	15.5	2	100	0	62	48	0	0	51	1.00
23295--23330	16	2.2	16	95	0	63	25	11	5	58	1.54
24350--24394	19	2.3	20	85	11	67	66	0	2	31	1.04
24592--24638	5	9.4	5	82	17	62	55	0	21	23	1.44
24590--24624	17	2.1	17	100	0	70	51	0	22	25	1.48
24592--24638	22	2.1	23	96	4	87	55	0	21	23	1.44
24857--25023	91	1.9	91	91	5	279	46	8	13	31	1.72
27215--27251	2	18.5	2	100	0	74	48	0	0	51	1.00
36693--36988	109	2.7	109	90	4	441	36	10	1	50	1.47
39399--39431	17	1.9	17	93	0	57	33	0	9	57	1.30
44445--44479	6	5.8	6	96	0	61	34	11	20	34	1.88
44647--44697	21	2.4	22	83	9	70	31	1	35	31	1.69
55272--55367	48	2.0	48	97	0	183	22	19	10	46	1.80
60931--60987	28	2.0	28	96	0	105	59	7	19	14	1.57
61322--61361	21	1.9	21	85	10	55	67	7	20	5	1.34
69185--69238	24	2.2	24	90	0	81	12	16	5	64	1.45
69813--69860	16	2.8	18	78	12	55	2	35	0	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77356--77410	3	18.3	3	82	0	65	1	36	5	56	1.33
82424--82465	21	2.0	21	95	0	75	23	30	33	11	1.91
82445--82585	33	4.3	32	84	7	140	19	42	27	9	1.83
82821--82856	17	2.0	19	89	10	58	22	5	11	61	1.50
90921--91120	78	2.7	70	81	11	247	37	13	0	49	1.42
90957--91126	78	2.2	78	96	0	313	36	15	0	48	1.45
90989--91111	39	3.2	39	63	25	96	38	14	0	47	1.45
91429--91661	70	3.2	71	83	10	283	50	0	12	36	1.47
91423--91661	78	3.2	78	88	5	334	50	0	12	36	1.46
96983--97825	438	1.9	439	86	1	1181	25	13	18	41	1.88
104213--104237	1	25.0	1	100	0	50	100	0	0	0	0.00
108032--108057	7	3.7	7	100	0	52	11	46	0	42	1.40
109876--109901	13	2.0	13	100	0	52	30	15	38	15	1.88
122608--122639	15	2.1	15	94	0	55	53	12	0	34	1.39
123026--123052	13	2.1	13	100	0	54	40	0	14	44	1.46
129979--130065	31	2.8	31	91	0	129	29	24	25	20	1.99
135372--135408	13	2.9	13	92	4	58	27	13	2	56	1.50
138960--139049	45	2.0	45	100	0	180	22	20	20	37	1.94
146530--146560	2	15.5	2	93	0	53	51	3	45	0	1.17
147248--147315	35	2.0	33	83	11	84	17	5	39	36	1.74
148311--148359	14	3.6	14	75	5	55	8	16	8	67	1.40
150911--151031	26	4.6	26	76	11	122	17	14	38	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150911--151031	53	2.3	52	88	4	172	17	14	38	29	1.89
151072--151116	15	3.0	15	86	0	63	15	26	44	13	1.83
156301--156330	8	3.8	8	100	0	60	76	0	10	13	1.01

Tables:   1

The End!