Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013730.1 Corchorus capsularis cultivar CVL-1 contig13751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32973

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1760--1818
27
2.2
27
90
0
91
30
33
15
20
1.93
2834--2878
21
2.1
21
83
0
54
31
8
28
31
1.88
2963--3054
42
2.2
42
86
3
123
27
39
28
5
1.78
4664--4694
15
2.1
15
100
0
62
32
38
16
12
1.86
5386--5440
21
2.6
21
94
0
92
38
18
12
30
1.88
6869--7105
103
2.3
105
91
4
383
39
9
9
41
1.69
10936--11000
23
2.8
24
83
6
80
41
21
16
20
1.90
10946--11007
23
2.7
23
82
0
70
48
19
16
16
1.81
16266--17517
331
3.8
328
81
6
1298
33
14
14
37
1.87
17806--17837
11
2.9
11
90
0
55
37
0
18
43
1.51
17806--17865
22
2.9
22
76
19
65
41
3
18
36
1.67
17816--17853
19
2.1
18
90
5
58
44
2
21
31
1.66
19200--19230
6
5.3
6
96
3
55
35
0
12
51
1.40
20632--20709
40
2.0
40
100
0
156
48
15
7
28
1.72
20737--23727
992
3.1
972
80
8
2743
33
14
15
35
1.88
30287--30321
3
11.7
3
90
0
52
62
2
31
2
1.24

Tables:   1

The End!