genome.fa.s13733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013733.1 Corchorus capsularis cultivar CVL-1 contig13754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66349

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293--350	29	2.0	28	86	3	80	43	13	18	24	1.87
8531--8591	32	1.9	32	89	0	95	22	9	26	40	1.85
8741--8779	20	2.0	20	85	10	53	35	5	5	53	1.45
8799--8858	17	3.6	17	78	10	61	5	13	31	50	1.63
8813--8856	17	2.6	17	89	3	63	6	11	27	54	1.61
10430--10479	25	2.0	25	96	0	91	28	34	22	16	1.95
11591--11650	16	3.8	16	95	0	111	6	13	38	41	1.70
11640--11685	17	2.7	17	83	6	58	2	23	50	23	1.61
12433--12466	17	1.9	18	88	5	52	0	20	55	23	1.43
12433--12493	6	9.5	6	78	19	52	1	19	47	31	1.59
12480--12591	48	2.3	48	96	0	206	11	16	35	36	1.85
12574--12610	6	6.3	6	82	17	51	0	16	48	35	1.46
15070--15162	47	2.0	47	93	0	159	45	22	15	17	1.85
15913--15990	38	2.1	38	92	4	131	29	19	1	50	1.56
17402--17463	29	2.2	28	88	2	88	37	22	6	33	1.80
20018--20059	17	2.5	17	88	7	59	35	23	19	21	1.96
21377--21419	20	2.2	20	100	0	86	44	0	13	41	1.44
21466--21882	209	2.0	208	98	0	798	38	6	11	43	1.67
21910--21944	6	5.8	6	100	0	70	51	0	14	34	1.42
24789--24823	5	7.0	5	96	0	61	82	0	17	0	0.66
27125--27160	2	18.5	2	88	5	56	52	2	0	44	1.15
28050--28106	27	2.0	29	90	10	91	21	10	12	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30383--30849	129	3.6	130	85	2	611	33	16	12	37	1.86
30383--30897	259	2.0	258	81	3	613	33	16	12	37	1.86
32491--33563	435	2.5	434	81	5	1186	31	13	11	43	1.79
37326--37359	17	2.1	17	94	5	61	26	5	17	50	1.69
45743--45797	22	2.5	23	91	5	87	38	27	5	29	1.79
47005--47143	19	7.2	19	68	20	83	30	17	7	44	1.75
46967--47180	58	3.7	58	97	0	401	28	18	6	46	1.74
47005--47183	39	4.6	37	69	23	102	29	18	6	45	1.75
47180--47234	29	2.0	29	85	7	78	21	16	3	58	1.54
47205--47630	54	7.9	53	81	12	446	27	19	4	48	1.67
47266--47361	30	3.3	30	66	14	83	23	17	2	56	1.52
47292--47378	30	3.0	30	66	14	83	31	14	2	51	1.55
47427--47516	27	3.3	27	65	11	76	23	22	4	50	1.67
47207--47630	107	4.0	107	81	12	460	27	19	4	48	1.67
47885--47930	12	3.8	12	91	0	74	45	0	2	52	1.13
49886--49920	17	2.1	17	100	0	70	68	0	0	31	0.90
50101--50383	56	5.1	56	84	6	357	27	18	5	48	1.69
50101--50383	110	2.6	111	83	8	357	27	18	5	48	1.69
53221--53301	27	3.0	27	79	1	90	33	14	24	27	1.95
53578--53664	32	3.0	28	66	18	68	27	21	28	21	1.99
53530--53929	60	6.7	60	85	3	470	30	22	25	21	1.99
53530--53929	120	3.3	120	85	1	518	30	22	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53666--53759	32	3.1	31	66	17	79	29	21	26	22	1.99
53531--53929	180	2.2	179	84	4	525	30	22	25	21	1.99
53560--53823	28	8.8	31	65	18	103	29	21	26	22	1.99
53965--54056	37	2.5	37	87	1	132	23	19	29	27	1.98
55816--55860	15	2.9	15	83	6	54	0	24	0	75	0.80
57677--57708	6	5.3	6	96	0	55	53	12	3	31	1.54
63890--63964	39	2.0	37	82	10	89	53	4	10	32	1.54

Tables:   1

The End!