Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013736.1 Corchorus capsularis cultivar CVL-1 contig13757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8893

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--86
22
3.2
22
81
4
70
30
8
20
41
1.82
151--244
22
4.2
22
69
10
55
35
6
19
39
1.77
308--540
22
10.5
23
72
12
132
41
9
15
34
1.79
324--1047
44
16.4
45
67
15
153
38
9
15
35
1.81
374--540
88
1.9
88
82
4
212
41
10
14
34
1.79
664--912
22
11.5
21
71
13
125
40
9
15
34
1.79
787--1085
22
13.4
23
72
7
120
36
10
15
37
1.83
664--1064
44
9.2
44
72
10
175
38
10
15
35
1.82
640--1047
22
18.7
22
69
14
116
38
10
14
36
1.81
1343--1401
30
2.0
30
86
0
82
30
16
6
45
1.74
1490--1578
38
2.5
36
82
12
112
13
14
13
58
1.64
1715--1752
19
2.0
20
85
15
53
28
5
2
63
1.30
1916--2003
22
4.0
21
77
4
86
32
12
19
35
1.89
2078--2206
56
2.3
56
80
7
129
37
8
17
36
1.81
2167--2409
22
10.9
22
69
19
89
39
9
14
35
1.79
2305--2407
44
2.4
45
81
6
122
41
9
12
35
1.76
2557--3136
22
26.6
22
69
13
150
39
10
15
35
1.81
2745--3005
45
5.8
45
73
12
132
36
10
14
37
1.81
3721--3764
12
3.6
12
87
3
61
2
11
0
86
0.66

Tables:   1

The End!