genome.fa.s13739.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013739.1 Corchorus capsularis cultivar CVL-1 contig13760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56037

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924--1964	15	2.7	15	80	3	55	80	4	0	14	0.87
2327--2388	31	2.0	30	87	3	88	32	17	4	45	1.70
2472--2536	30	2.1	31	88	8	98	30	20	3	46	1.66
2309--2597	143	2.0	145	94	1	510	34	12	5	46	1.66
2872--2909	19	2.0	20	85	15	53	28	5	2	63	1.30
3107--3206	22	4.6	21	78	8	110	36	12	18	34	1.87
3107--3206	44	2.3	43	91	5	164	36	12	18	34	1.87
3085--3258	22	7.8	22	73	5	107	33	9	19	37	1.84
3294--3689	22	17.9	22	69	12	159	39	9	16	34	1.81
3768--3819	20	2.6	20	93	0	86	42	11	17	28	1.84
3952--4059	22	4.8	22	74	12	85	41	8	13	36	1.75
3954--4043	23	3.9	23	82	8	94	42	6	14	36	1.72
3768--4079	44	7.3	44	68	13	125	41	7	15	35	1.76
3976--4090	22	5.1	22	80	7	81	38	8	14	38	1.77
4249--4302	22	2.5	22	81	0	63	40	12	11	35	1.79
8241--8277	12	3.1	12	100	0	74	51	8	24	16	1.71
9911--9959	7	7.0	7	97	0	89	26	16	42	14	1.86
10032--10068	7	5.3	7	96	0	65	27	16	43	13	1.85
9923--10144	109	2.0	109	100	0	444	29	15	32	22	1.95
13066--13098	17	1.9	17	100	0	66	30	36	6	27	1.81
18047--18152	16	6.7	16	87	1	151	7	12	37	42	1.71
32109--32209	50	2.0	51	88	5	152	31	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33411--33466	28	2.1	28	93	6	98	53	10	17	17	1.72
33861--33930	33	2.1	33	100	0	140	37	31	2	28	1.72
39621--40152	35	15.7	33	71	14	211	39	10	18	32	1.84
39757--39870	53	2.2	53	90	6	178	39	8	19	32	1.82
39722--39898	88	2.0	88	94	0	309	39	9	18	32	1.82
39810--40152	70	4.8	70	83	9	417	38	10	18	32	1.85
39832--40150	113	2.9	113	82	10	351	38	10	17	32	1.85
39941--40035	17	5.5	17	65	18	61	38	13	15	31	1.87
39902--39987	43	2.0	43	86	8	122	40	10	16	32	1.82
39946--40152	106	2.0	105	85	6	285	38	11	18	31	1.87
42853--42888	19	1.9	18	88	5	54	33	22	2	41	1.68
44470--44536	33	2.1	32	82	2	80	53	11	2	31	1.52
45504--45531	14	2.0	14	100	0	56	14	35	14	35	1.86
45469--45531	33	1.9	33	83	6	83	19	25	19	36	1.94
52729--52764	19	1.9	18	88	5	54	33	22	2	41	1.68
53356--53417	27	2.3	27	77	0	70	25	22	19	32	1.97
54303--54353	24	2.1	24	96	0	93	60	17	5	15	1.54
55600--55635	18	2.0	18	89	10	56	61	5	33	0	1.19

Tables:   1

The End!