Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013741.1 Corchorus capsularis cultivar CVL-1 contig13762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49461

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
691--725
18
1.9
18
100
0
70
48
0
11
40
1.39
7235--7259
11
2.3
11
100
0
50
68
16
0
16
1.22
10267--10341
38
2.0
38
91
0
123
36
10
8
45
1.68
21888--21947
31
1.9
31
90
6
95
38
11
13
36
1.81
31904--32162
36
7.2
36
90
2
378
42
12
16
28
1.85
32219--32319
29
3.4
29
69
15
98
34
19
19
25
1.96
32190--32350
60
2.7
60
92
1
261
36
20
18
24
1.95
32248--32351
31
3.4
30
72
15
97
38
19
18
24
1.93
32383--32512
31
4.3
31
82
12
171
23
20
20
35
1.96
32383--32556
91
1.9
90
89
3
269
27
20
19
32
1.97
37756--38055
163
1.8
163
92
2
514
25
21
25
28
1.99
43097--43140
16
2.8
16
86
10
63
54
27
13
4
1.58
43097--43149
16
3.3
16
77
17
56
49
28
15
7
1.71
43360--43468
32
3.4
32
91
3
175
39
36
10
13
1.79
43454--43485
17
1.9
16
93
6
55
31
40
15
12
1.85
43474--43530
30
1.9
30
85
0
78
29
43
19
7
1.77

Tables:   1

The End!