Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013748.1 Corchorus capsularis cultivar CVL-1 contig13769, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46802

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
758--792
13
2.7
13
100
0
70
20
8
8
62
1.49
789--816
6
4.7
6
100
0
56
32
0
14
53
1.41
1272--1328
27
2.1
27
86
0
78
33
19
17
29
1.95
3375--3499
45
2.9
45
79
6
127
48
12
24
15
1.80
3470--3506
18
2.1
18
94
0
65
54
10
24
10
1.67
3864--4060
98
2.0
98
100
0
394
24
14
20
41
1.89
8087--8200
60
1.9
61
87
5
169
32
8
14
43
1.77
8673--8706
2
16.5
2
93
6
59
50
0
2
47
1.16
8906--9008
50
2.1
50
100
0
206
33
9
22
34
1.87
11948--11998
21
2.4
21
93
0
93
33
13
35
17
1.89
16352--16442
46
2.0
46
97
0
173
49
7
10
31
1.66
25456--25484
5
6.0
5
92
8
51
58
0
0
41
0.98
28385--28476
33
3.0
29
76
14
94
11
26
36
25
1.90
29833--29865
17
1.9
17
100
0
66
30
36
6
27
1.81
30014--30054
21
2.0
21
95
0
73
34
34
14
17
1.90
30573--30616
19
2.4
19
88
3
63
52
2
13
31
1.53
34101--34136
2
18.0
2
100
0
72
50
0
0
50
1.00
46205--46282
33
2.4
33
77
12
88
16
12
21
48
1.80
46470--46512
15
2.9
15
75
0
50
23
27
25
23
2.00

Tables:   1

The End!