genome.fa.s13749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013749.1 Corchorus capsularis cultivar CVL-1 contig13770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63850

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211--284	33	2.2	33	79	9	80	32	17	16	33	1.92
7--923	213	4.4	212	79	9	914	24	17	21	36	1.94
534--1899	198	6.8	196	71	15	797	23	17	21	37	1.94
730--1103	183	2.0	183	84	6	490	23	16	20	38	1.92
1330--1368	15	2.6	15	79	0	51	23	25	25	25	2.00
1532--1568	15	2.5	15	90	0	56	21	16	27	35	1.94
1649--1722	33	2.2	33	81	9	89	35	18	13	32	1.90
390--1892	828	1.8	826	93	0	2594	23	17	21	37	1.94
1547--1896	183	1.9	183	81	3	418	23	17	20	38	1.93
3010--3103	31	3.0	32	81	7	104	18	8	34	39	1.81
3014--3103	32	2.8	32	83	5	103	18	8	33	38	1.82
4180--4367	103	1.8	102	88	3	288	41	15	12	30	1.84
7031--7105	37	2.0	37	84	0	96	34	13	20	32	1.91
7362--7414	6	8.7	6	89	6	72	0	1	15	83	0.74
7429--7528	53	1.9	52	93	2	173	41	10	19	30	1.84
9255--9365	54	2.1	54	94	0	195	52	19	6	21	1.68
9262--9346	27	3.1	27	69	12	84	49	22	7	21	1.73
9271--9355	27	3.1	27	70	12	84	49	21	8	21	1.75
9782--9854	30	2.4	30	86	0	110	16	32	10	39	1.83
11205--11250	24	1.9	24	100	0	92	56	6	32	4	1.45
15000--15147	76	1.9	76	86	2	208	35	8	27	28	1.86
16852--16938	41	2.1	41	93	0	156	52	6	17	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20676--20719	22	2.0	22	95	0	79	9	20	13	56	1.64
23958--24222	26	10.1	25	73	12	158	55	7	19	16	1.65
23962--24222	53	4.9	53	88	0	378	55	8	19	16	1.65
24300--24408	34	3.4	31	78	10	114	53	0	25	20	1.52
24456--24600	20	6.9	20	77	10	96	53	4	20	22	1.64
24407--24681	64	4.4	65	77	9	257	54	4	20	20	1.60
24407--24681	22	13.0	21	75	11	235	54	4	20	20	1.60
24655--24741	14	6.1	14	73	5	66	60	3	17	18	1.49
24658--24759	29	3.5	29	85	2	143	61	2	17	17	1.46
24676--24754	14	5.3	15	68	18	58	64	2	15	17	1.40
24814--24903	42	2.1	43	81	6	103	53	6	15	24	1.66
24877--24903	14	1.9	14	100	0	54	51	7	18	22	1.70
26065--26822	201	3.8	199	84	6	953	33	14	18	34	1.91
26106--26822	200	3.6	197	85	5	944	33	13	17	34	1.90
26708--26941	127	1.8	131	89	5	379	31	15	18	34	1.92
27512--27542	16	1.9	16	93	0	53	54	0	9	35	1.33
37537--37577	18	2.2	19	83	12	50	48	19	2	29	1.61
39493--39858	156	2.3	155	77	7	375	34	20	15	29	1.94
45985--46346	136	2.7	135	90	0	553	19	26	26	27	1.99
47840--48139	156	1.9	155	78	9	324	33	19	17	30	1.95
49699--49732	17	2.0	17	94	0	59	55	14	5	23	1.61
49805--49840	11	3.2	12	85	14	51	88	0	0	11	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49805--49840	10	3.6	10	96	0	63	88	0	0	11	0.50
55125--55247	33	3.7	33	81	8	142	24	40	26	8	1.84
59763--61728	980	2.0	980	97	0	3720	31	13	14	40	1.84

Tables:   1

The End!