Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013750.1 Corchorus capsularis cultivar CVL-1 contig13771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12151

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145--200
25
2.3
25
87
6
80
41
1
26
30
1.66
274--313
20
2.0
20
85
0
53
30
7
40
22
1.81
373--406
15
2.3
15
94
0
59
14
0
20
64
1.28
636--681
3
14.3
3
86
13
65
36
0
0
63
0.95
629--681
14
4.0
13
87
9
72
37
1
0
60
1.08
5254--5293
13
2.9
13
82
10
53
50
0
0
50
1.00
8254--8395
27
5.1
27
75
14
135
21
29
30
18
1.97
8354--8436
41
2.0
41
84
9
107
24
27
24
24
2.00
8399--8499
27
3.7
27
77
2
105
23
24
30
20
1.99
8395--8526
54
2.4
54
80
9
162
25
25
28
21
1.99
8862--9062
48
4.2
48
90
0
267
33
27
18
20
1.96
8862--9027
24
6.9
24
67
0
107
32
25
19
21
1.97

Tables:   1

The End!