Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013751.1 Corchorus capsularis cultivar CVL-1 contig13772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84244
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2991 original size:21 final size:22
Alignment explanation
Indices: 2965--3009 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
2955 TCAATCTAAA
2965 TTGCTAAATACGGCCCC-CTTT
1 TTGCTAAATACGGCCCCACTTT
** *
2986 TTGCTATTTACTGCCCCACTTT
1 TTGCTAAATACGGCCCCACTTT
3008 TT
1 TT
3010 ACACTTTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.16, C:0.31, G:0.11, T:0.42
Consensus pattern (22 bp):
TTGCTAAATACGGCCCCACTTT
Found at i:3281 original size:13 final size:13
Alignment explanation
Indices: 3263--3287 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3253 TGTTGTTATT
3263 TTGTAGATCTAAG
1 TTGTAGATCTAAG
3276 TTGTAGATCTAA
1 TTGTAGATCTAA
3288 AATTTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TTGTAGATCTAAG
Found at i:3462 original size:15 final size:16
Alignment explanation
Indices: 3431--3469 Score: 62
Period size: 15 Copynumber: 2.4 Consensus size: 16
3421 TTAGATTTTT
3431 TTAATTATTGATTATTA
1 TTAATTATT-ATTATTA
3448 TTAATTATT-TTATTA
1 TTAATTATTATTATTA
3463 TTAATTA
1 TTAATTA
3470 CAATTTTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 13 0.59
17 9 0.41
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTAATTATTATTATTA
Found at i:3603 original size:156 final size:156
Alignment explanation
Indices: 3421--3731 Score: 577
Period size: 156 Copynumber: 2.0 Consensus size: 156
3411 GTAATTTGTT
* *
3421 TTAGATTTTTTTAATTATTGATTATTATTAATTATTTTATTATTAATTACAATTTTGAAATTGTG
1 TTAGATTTTTTTAATTATTGATTATTATTAATAATCTTATTATTAATTACAATTTTGAAATTGTG
*
3486 AAATTTAATTAAGATTAATTAGTGTTAACACTTTTGTGTAATTAATATTTAATAATTAAATTTTG
66 AAATTTAATTAAAATTAATTAGTGTTAACACTTTTGTGTAATTAATATTTAATAATTAAATTTTG
3551 CAGGTTTCATTAGAAGATTTTGGTGG
131 CAGGTTTCATTAGAAGATTTTGGTGG
*
3577 TTAGATTTTTTTAATTATTGATTATTATTAATAATCTTATTATTAATTACAATTTTGAATTTGTG
1 TTAGATTTTTTTAATTATTGATTATTATTAATAATCTTATTATTAATTACAATTTTGAAATTGTG
*
3642 AAATTTAATTAAAATTAATTAGTGTTAACACTTTTGTGTAATTAATATTTAGTAATTAAATTTTG
66 AAATTTAATTAAAATTAATTAGTGTTAACACTTTTGTGTAATTAATATTTAATAATTAAATTTTG
3707 CAGGTTTCATTAGAAGATTTTGGTG
131 CAGGTTTCATTAGAAGATTTTGGTG
3732 ATGACGGGCG
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 150 1.00
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (156 bp):
TTAGATTTTTTTAATTATTGATTATTATTAATAATCTTATTATTAATTACAATTTTGAAATTGTG
AAATTTAATTAAAATTAATTAGTGTTAACACTTTTGTGTAATTAATATTTAATAATTAAATTTTG
CAGGTTTCATTAGAAGATTTTGGTGG
Found at i:5012 original size:18 final size:18
Alignment explanation
Indices: 4979--5028 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
4969 TACCGGTGAT
*
4979 GCTCCGAC-ACATCATCA
1 GCTCCGACAAAATCATCA
4996 GCTCCGACAAAATCATCA
1 GCTCCGACAAAATCATCA
**
5014 AATCCGACAAAATCA
1 GCTCCGACAAAATCA
5029 GGCTGCTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 8 0.28
18 21 0.72
ACGTcount: A:0.40, C:0.34, G:0.10, T:0.16
Consensus pattern (18 bp):
GCTCCGACAAAATCATCA
Found at i:7454 original size:13 final size:13
Alignment explanation
Indices: 7432--7471 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7422 CAGAGAGTAT
7432 TATCAACAGAAGA
1 TATCAACAGAAGA
*
7445 TATCATCAGAAGA
1 TATCAACAGAAGA
* *
7458 TTTCAACTGAAGA
1 TATCAACAGAAGA
7471 T
1 T
7472 TATCTGGAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (13 bp):
TATCAACAGAAGA
Found at i:7484 original size:11 final size:11
Alignment explanation
Indices: 7464--7494 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7454 AAGATTTCAA
7464 CTGAAGATTAT
1 CTGAAGATTAT
*
7475 CTGGAGATTAT
1 CTGAAGATTAT
7486 CTGAAGATT
1 CTGAAGATT
7495 TAAGTAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (11 bp):
CTGAAGATTAT
Found at i:7810 original size:15 final size:16
Alignment explanation
Indices: 7790--7832 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
7780 TCTTCCAATA
7790 TTAAGTTTTTAT-TTC
1 TTAAGTTTTTATATTC
*
7805 TTAAGTTGTTTATATTG
1 TTAAGTT-TTTATATTC
*
7822 TTATGTTTTTA
1 TTAAGTTTTTA
7833 CCTTTATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.29
16 9 0.38
17 8 0.33
ACGTcount: A:0.21, C:0.02, G:0.12, T:0.65
Consensus pattern (16 bp):
TTAAGTTTTTATATTC
Found at i:8012 original size:39 final size:41
Alignment explanation
Indices: 7932--8012 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 41
7922 CACCTTGGTA
* **
7932 ACCTTTGACACCAGAAGTTGTCACTTTGGTAAATTAAAATT
1 ACCTTCGACACCAGAAGTTGTCACTCCGGTAAATTAAAATT
* *
7973 ACCTTCGACACCA-AAG-TGTTACTCCGGTAAATTATAATT
1 ACCTTCGACACCAGAAGTTGTCACTCCGGTAAATTAAAATT
8012 A
1 A
8013 ATTACTATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 20 0.57
40 3 0.09
41 12 0.34
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (41 bp):
ACCTTCGACACCAGAAGTTGTCACTCCGGTAAATTAAAATT
Found at i:10396 original size:30 final size:30
Alignment explanation
Indices: 10361--10427 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
10351 GACTGGGTTG
*
10361 CGTGTATAACACGAGCTGACGTGGATGACA
1 CGTGTATAACACGAGCTGACATGGATGACA
* *
10391 CGTGTATAACAGGCGCTGACATGGATGACA
1 CGTGTATAACACGAGCTGACATGGATGACA
10421 CGTGTAT
1 CGTGTAT
10428 GCCCACATGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (30 bp):
CGTGTATAACACGAGCTGACATGGATGACA
Found at i:11928 original size:20 final size:20
Alignment explanation
Indices: 11895--11941 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
11885 TTTCCTTTAA
*
11895 TTTCCGAAAAAAAAAAAAATT
1 TTTCCG-AAAAAAAAAACATT
11916 ATTTCCGAAAAAAAAAACATT
1 -TTTCCGAAAAAAAAAACATT
11937 TTTCC
1 TTTCC
11942 CTTTTTCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
21 13 0.54
22 6 0.25
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (20 bp):
TTTCCGAAAAAAAAAACATT
Found at i:15799 original size:12 final size:12
Alignment explanation
Indices: 15782--15807 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15772 TTCATTAAAA
15782 AAACCGACCGCC
1 AAACCGACCGCC
15794 AAACCGACCGCC
1 AAACCGACCGCC
15806 AA
1 AA
15808 TCAAATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00
Consensus pattern (12 bp):
AAACCGACCGCC
Found at i:16112 original size:13 final size:12
Alignment explanation
Indices: 16082--16114 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
16072 ATAACAAAAT
16082 TAAAACCGACTA
1 TAAAACCGACTA
16094 -AAAACCGACTAA
1 TAAAACCGACT-A
16106 TAAAACCGA
1 TAAAACCGA
16115 AAACCGACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 1 0.05
13 8 0.42
ACGTcount: A:0.55, C:0.24, G:0.09, T:0.12
Consensus pattern (12 bp):
TAAAACCGACTA
Found at i:19677 original size:12 final size:12
Alignment explanation
Indices: 19657--19725 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
19647 GGTTTAGAAT
*
19657 TTGATAATGTAG
1 TTGAAAATGTAG
19669 TTGAAAATG-ATG
1 TTGAAAATGTA-G
*
19681 TTGAAAATGTTG
1 TTGAAAATGTAG
*
19693 ATGAAAATG-ATG
1 TTGAAAATGTA-G
19705 TTGAAAATGTAG
1 TTGAAAATGTAG
19717 TTGAAAATG
1 TTGAAAATG
19726 GTGAAGAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
11 1 0.02
12 46 0.96
13 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.35
Consensus pattern (12 bp):
TTGAAAATGTAG
Found at i:19684 original size:24 final size:24
Alignment explanation
Indices: 19657--19725 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
19647 GGTTTAGAAT
*
19657 TTGATAATGTAGTTGAAAATGATG
1 TTGAAAATGTAGTTGAAAATGATG
* *
19681 TTGAAAATGTTGATGAAAATGATG
1 TTGAAAATGTAGTTGAAAATGATG
19705 TTGAAAATGTAGTTGAAAATG
1 TTGAAAATGTAGTTGAAAATG
19726 GTGAAGAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.35
Consensus pattern (24 bp):
TTGAAAATGTAGTTGAAAATGATG
Found at i:19855 original size:18 final size:18
Alignment explanation
Indices: 19833--19981 Score: 111
Period size: 18 Copynumber: 8.3 Consensus size: 18
19823 AACAGTTGAG
* * *
19833 GAAGTTCCTGAAGTTGCT
1 GAAGTTGCTCAAGTTCCT
* *
19851 CAAGTTCCTCAAGTTCCT
1 GAAGTTGCTCAAGTTCCT
**
19869 GAAGTTGCTCAAGACCCT
1 GAAGTTGCTCAAGTTCCT
*
19887 GAAGTTGCTCAAGTACCT
1 GAAGTTGCTCAAGTTCCT
***
19905 GAAGTTGCTCAAGTTGAG
1 GAAGTTGCTCAAGTTCCT
* * *
19923 GAAGTTCCTGAAGTTGCT
1 GAAGTTGCTCAAGTTCCT
* * *
19941 CAAG-TACGTGAAGTTCCT
1 GAAGTTGC-TCAAGTTCCT
*
19959 GAAGGTGCTCAAGTTCCT
1 GAAGTTGCTCAAGTTCCT
*
19977 TAAGT
1 GAAGT
19982 CAATGATAAT
Statistics
Matches: 104, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
17 2 0.02
18 100 0.96
19 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (18 bp):
GAAGTTGCTCAAGTTCCT
Found at i:19864 original size:27 final size:27
Alignment explanation
Indices: 19834--19981 Score: 116
Period size: 27 Copynumber: 5.1 Consensus size: 27
19824 ACAGTTGAGG
19834 AAGTTCCTGAAGTTGCTCAAGTTCCTC
1 AAGTTCCTGAAGTTGCTCAAGTTCCTC
*
19861 AAGTTCCTGAAGTTGCTCAAGACCCTGAAGTTGCTC
1 AAGTTCCTGAAGTTGCT-------C--AAGTTCCTC
* ****
19897 AAGTACCTGAAGTTGCTCAAGTTGAGG
1 AAGTTCCTGAAGTTGCTCAAGTTCCTC
* * *
19924 AAGTTCCTGAAGTTGCTCAAGTACGTG
1 AAGTTCCTGAAGTTGCTCAAGTTCCTC
* *
19951 AAGTTCCTGAAGGTGCTCAAGTTCCTT
1 AAGTTCCTGAAGTTGCTCAAGTTCCTC
19978 AAGT
1 AAGT
19982 CAATGATAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
27 72 0.73
29 1 0.01
34 1 0.01
36 24 0.24
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (27 bp):
AAGTTCCTGAAGTTGCTCAAGTTCCTC
Found at i:19973 original size:45 final size:45
Alignment explanation
Indices: 19834--19981 Score: 188
Period size: 45 Copynumber: 3.3 Consensus size: 45
19824 ACAGTTGAGG
* *
19834 AAGTTCCTGAAGTTGCTCAAGTTCCTCAAGTTCCTGAAGTTGCTC
1 AAGTTCCTGAAGTTGCTCAAGTACCTGAAGTTCCTGAAGTTGCTC
** * * ***
19879 AAGACCCTGAAGTTGCTCAAGTACCTGAAGTTGCTCAAGTTGAGG
1 AAGTTCCTGAAGTTGCTCAAGTACCTGAAGTTCCTGAAGTTGCTC
* *
19924 AAGTTCCTGAAGTTGCTCAAGTACGTGAAGTTCCTGAAGGTGCTC
1 AAGTTCCTGAAGTTGCTCAAGTACCTGAAGTTCCTGAAGTTGCTC
*
19969 AAGTTCCTTAAGT
1 AAGTTCCTGAAGT
19982 CAATGATAAT
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 84 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (45 bp):
AAGTTCCTGAAGTTGCTCAAGTACCTGAAGTTCCTGAAGTTGCTC
Found at i:20271 original size:15 final size:15
Alignment explanation
Indices: 20234--20271 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
20224 CTAATGAAGC
20234 TGAAAGGGATAATGG
1 TGAAAGGGATAATGG
*
20249 T-AATAGGGATAATGT
1 TGAA-AGGGATAATGG
20264 TGAAAGGG
1 TGAAAGGG
20272 GTGGCAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (15 bp):
TGAAAGGGATAATGG
Found at i:22140 original size:10 final size:10
Alignment explanation
Indices: 22112--22151 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
22102 TGGGTTCCGC
**
22112 TTTTTTTCCC
1 TTTTTTTCTT
22122 TTTTTTTCTT
1 TTTTTTTCTT
22132 TTTTTTTCTT
1 TTTTTTTCTT
*
22142 TCTTTTTCTT
1 TTTTTTTCTT
22152 AAAAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:28727 original size:42 final size:42
Alignment explanation
Indices: 28664--28743 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
28654 GCTCACAATC
* *
28664 ATCTAATCTATGTTTGTGTCATCTTCTACAACCCAGTGCTCA
1 ATCTAATCCATGTTTGTGTCATCTTCGACAACCCAGTGCTCA
* *
28706 ATCTAATCCGTGTTT-TCGTCATCTTCGATAACCCAGTG
1 ATCTAATCCATGTTTGT-GTCATCTTCGACAACCCAGTG
28744 GTCTCTCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 32 0.97
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.38
Consensus pattern (42 bp):
ATCTAATCCATGTTTGTGTCATCTTCGACAACCCAGTGCTCA
Found at i:29674 original size:23 final size:23
Alignment explanation
Indices: 29646--29707 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
29636 TTCTTTAGAA
29646 ACCATTATAATAATTTTGAAGGG
1 ACCATTATAATAATTTTGAAGGG
*
29669 ACCA-T-TAATGATTTTTGAAGGG
1 ACCATTATAAT-AATTTTGAAGGG
*
29691 GCCATTACTTAATAATT
1 ACCATTA--TAATAATT
29708 AGCTATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
21 4 0.13
22 15 0.48
23 5 0.16
25 3 0.10
26 4 0.13
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.37
Consensus pattern (23 bp):
ACCATTATAATAATTTTGAAGGG
Found at i:31820 original size:14 final size:14
Alignment explanation
Indices: 31798--31830 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
31788 CCCAACAAGG
31798 AAAAA-AAAAAAAA
1 AAAAAGAAAAAAAA
*
31811 AAAAAGAAAAAGAA
1 AAAAAGAAAAAAAA
31825 AAAAAG
1 AAAAAG
31831 GGGAAAATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:46815 original size:34 final size:34
Alignment explanation
Indices: 46775--46840 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
46765 GAAGACTACA
* *
46775 GAATTTTCAACTGAATTATGAGCAAAGAAGAATC
1 GAATTTTCAACAGAATCATGAGCAAAGAAGAATC
*
46809 GAATTTTCAACAGAATCATGTGCAAAGAAGAA
1 GAATTTTCAACAGAATCATGAGCAAAGAAGAA
46841 GCCAACAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (34 bp):
GAATTTTCAACAGAATCATGAGCAAAGAAGAATC
Found at i:47891 original size:15 final size:16
Alignment explanation
Indices: 47871--47934 Score: 96
Period size: 16 Copynumber: 4.1 Consensus size: 16
47861 CAGGATTATT
47871 AAAAAAA-AAAACAAA
1 AAAAAAACAAAACAAA
47886 AAAAAAACAAAACAAA
1 AAAAAAACAAAACAAA
47902 AAACAAAACAAAAC-AA
1 AAA-AAAACAAAACAAA
*
47918 AATAAAACAAAACAAA
1 AAAAAAACAAAACAAA
47934 A
1 A
47935 CTTATAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
15 17 0.38
16 18 0.40
17 10 0.22
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (16 bp):
AAAAAAACAAAACAAA
Found at i:47935 original size:5 final size:5
Alignment explanation
Indices: 47873--47935 Score: 72
Period size: 5 Copynumber: 12.0 Consensus size: 5
47863 GGATTATTAA
* * *
47873 AAAAA AAAAC AAAAAA AAAAC AAAAC AAAAAAC AAAAC AAAAC AAAAT
1 AAAAC AAAAC -AAAAC AAAAC AAAAC --AAAAC AAAAC AAAAC AAAAC
47921 AAAAC AAAAC AAAAC
1 AAAAC AAAAC AAAAC
47936 TTATAAAAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
5 41 0.82
6 4 0.08
7 5 0.10
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.02
Consensus pattern (5 bp):
AAAAC
Found at i:51698 original size:31 final size:31
Alignment explanation
Indices: 51629--51730 Score: 123
Period size: 31 Copynumber: 3.3 Consensus size: 31
51619 TCCTTTTGTG
* * **
51629 CACGTGGCATGCCACGTGCCATTTTTTGAAA
1 CACGTGGCATGCCACGTGTCACTTTTTGGTA
*
51660 CATGTGGCATGCCACGTGTCACTTTTTGGTA
1 CACGTGGCATGCCACGTGTCACTTTTTGGTA
* * *
51691 CACGTGGCGTGACATGTGTCACTTTTTGGTA
1 CACGTGGCATGCCACGTGTCACTTTTTGGTA
*
51722 CATGTGGCA
1 CACGTGGCA
51731 CGACTTTTTG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (31 bp):
CACGTGGCATGCCACGTGTCACTTTTTGGTA
Found at i:60524 original size:2 final size:2
Alignment explanation
Indices: 60519--60553 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
60509 TGTGTGTGTG
60519 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60554 CATTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:60642 original size:13 final size:13
Alignment explanation
Indices: 60624--60648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60614 TTAAAAGAAG
60624 CAGAATATAATAT
1 CAGAATATAATAT
60637 CAGAATATAATA
1 CAGAATATAATA
60649 CCTTAGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
CAGAATATAATAT
Found at i:71187 original size:101 final size:104
Alignment explanation
Indices: 70991--71197 Score: 285
Period size: 109 Copynumber: 2.0 Consensus size: 104
70981 ATTAATCGGA
* * * *
70991 TATATTAATTTTTCAACAAAATAATCCGACTTTACATTATAAATTTTAAGGTTGGGATATTCGGA
1 TATATTAATTCTTCAACAAAATAATCCGACTTTACATTATAAATTATAAGGCTGAGATATT----
*
71056 AAAAAGAAAACAAAAAAATTGATTTAAGGATATTGTTAATTAAT
62 AAAAAGAAAACAAAAAAACTGA-TTAAGGATATTGTTAATTAAT
* *
71100 TATATTAATTCTTGAACAAAATAATCCGACTTTACATTATAAATTATAATGCTGAGATATT-AAA
1 TATATTAATTCTTCAACAAAATAATCCGACTTTACATTATAAATTATAAGGCTGAGATATTAAAA
71164 A-AAAACAAAAAAACTGA-TAAGGATATTGTTAATT
66 AGAAAACAAAAAAACTGATTAAGGATATTGTTAATT
71198 CATTTTTACT
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
101 17 0.19
103 15 0.16
104 4 0.04
109 55 0.60
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (104 bp):
TATATTAATTCTTCAACAAAATAATCCGACTTTACATTATAAATTATAAGGCTGAGATATTAAAA
AGAAAACAAAAAAACTGATTAAGGATATTGTTAATTAAT
Found at i:71885 original size:15 final size:15
Alignment explanation
Indices: 71865--71916 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
71855 TTTTGTAGAT
71865 TTAATTAAATACAAA
1 TTAATTAAATACAAA
71880 TTAATTAAATACAAA
1 TTAATTAAATACAAA
* *
71895 TTAATAAAATTAAAAA
1 TTAATTAAA-TACAAA
71911 TTAATT
1 TTAATT
71917 TTATAATGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 23 0.70
16 10 0.30
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAATTAAATACAAA
Found at i:71996 original size:31 final size:31
Alignment explanation
Indices: 71952--72010 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
71942 GTTAGATAAG
* *
71952 TAAGGATATAATAGGTATTTTAAAAGTTAAA
1 TAAGGATACAATAGGTATTTCAAAAGTTAAA
*
71983 TAAGGGTACAATAGGTATTTCAAAAGTT
1 TAAGGATACAATAGGTATTTCAAAAGTT
72011 TCTCAAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (31 bp):
TAAGGATACAATAGGTATTTCAAAAGTTAAA
Found at i:72056 original size:6 final size:6
Alignment explanation
Indices: 72030--72096 Score: 95
Period size: 6 Copynumber: 11.3 Consensus size: 6
72020 TCGTACTTTT
72030 ATATAG -TATAG ATAGATAG ATATAG ATATAG ATATAG --ATAG ATATAG
1 ATATAG ATATAG AT--ATAG ATATAG ATATAG ATATAG ATATAG ATATAG
72077 ATATAG ATATAG ATATAG AT
1 ATATAG ATATAG ATATAG AT
72097 TAGGCAATCA
Statistics
Matches: 56, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.07
5 5 0.09
6 41 0.73
8 6 0.11
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (6 bp):
ATATAG
Found at i:72069 original size:22 final size:22
Alignment explanation
Indices: 72030--72091 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
72020 TCGTACTTTT
72030 ATATAG-TATAG--ATAGATAG
1 ATATAGATATAGATATAGATAG
72049 ATATAGATATAGATATAGATAG
1 ATATAGATATAGATATAGATAG
72071 ATATAGATATAGATATAGATA
1 ATATAGATATAGATATAGATA
72092 TAGATTAGGC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
19 6 0.15
20 5 0.12
22 29 0.73
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (22 bp):
ATATAGATATAGATATAGATAG
Found at i:72772 original size:5 final size:5
Alignment explanation
Indices: 72719--72765 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
72709 AGAGGATTCA
* *
72719 TGTTT TGTTT TGTTTT TTTTT TGTTT TATTT TGTTT TGTTT TGTTT T
1 TGTTT TGTTT TG-TTT TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT T
72766 TTGTTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (5 bp):
TGTTT
Found at i:72775 original size:10 final size:10
Alignment explanation
Indices: 72719--72779 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
72709 AGAGGATTCA
*
72719 TGTTTTGTTT
1 TGTTTTTTTT
72729 TGTTTTTTTTT
1 TG-TTTTTTTT
*
72740 TGTTTTATTT
1 TGTTTTTTTT
*
72750 TGTTTTGTTT
1 TGTTTTTTTT
72760 TGTTTTTTGTT
1 TGTTTTTT-TT
72771 T-TTTTTTTT
1 TGTTTTTTTT
72780 CGTGTTGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
9 2 0.04
10 31 0.69
11 12 0.27
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (10 bp):
TGTTTTTTTT
Found at i:72785 original size:27 final size:26
Alignment explanation
Indices: 72721--72777 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
72711 AGGATTCATG
72721 TTTTGTTTTGTTTTTTTTTTGTTTTA
1 TTTTGTTTTGTTTTTTTTTTGTTTTA
*
72747 TTTTGTTTTGTTTTGTTTTTTGTTTTT
1 TTTTGTTTTGTTTT-TTTTTTGTTTTA
72774 TTTT
1 TTTT
72778 TTCGTGTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (26 bp):
TTTTGTTTTGTTTTTTTTTTGTTTTA
Found at i:73709 original size:491 final size:490
Alignment explanation
Indices: 72769--73722 Score: 1703
Period size: 491 Copynumber: 1.9 Consensus size: 490
72759 TTGTTTTTTG
*
72769 TTTTTTTTTTTCGTGTTGTAAGATATAATCCTTGACAAGTCATATCAGCTAGCGTTGGCGCTACA
1 TTTTTTTTTTTCGTGTTGTAAGATATAATCCTTGACAAGTCATATCAACTAGCGTTGGCGCTACA
* *
72834 AGCATTCTTTGTTTTAGAGTGGTATTTGATTAATTCATTGAATTATATAAGACTGCAGTAAAATT
66 AGCATTCTTTGTTTTAGAGTGGTACTTGATTAATTCATTGAATTATATAAGACTGCAGTAAAAAT
72899 GCAATTTAAATGGATTAGTTTTAAGGCTTAATACCCAAATTAGCCCCTTAACTATCCATTTTGGG
131 GCAATTTAAATGGATTAGTTTTAAGGCTTAATACCCAAATTAGCCCCTTAACTATCCATTTTGGG
* *
72964 ACAAGTTGGCTCCTTTACTTTTTTTAGGACAAATAAATCCCATAACTTTAAAAAGTGAGACAACT
196 ACAAGTTGGCCCCTTTACTTGTTTTAGGACAAATAAATCCCATAACTTTAAAAAGTGAGACAACT
* * *
73029 TAGCCCTTTTTTTACGAACTGTTTAACGTTCGGAAGGTAAGGACGCATCTGACTTCCGATTAAGA
261 TAGCCCTTTTCTTACGAACTGTTTAACGTCCGGAAGGTAAGGACGCATCCGACTTCCGATTAAGA
*
73094 CGATTCTAGCGGAGTTTGAAAGATCTCGGCGAGAAGAATCAGATGGTCATGGAGGTGAGAAAATC
326 CGATTCTAGCGGAGTTTGAAAGATCTCGACGAGAAGAATCAGATGGTCATGGAGGTGAGAAAATC
* *
73159 AAACAATCGGAAAATTTCAGATCTCGAGTCAAATTTAAAACTTTGAGTGGAAGGTACGGTCTTAT
391 AAACAATCGGAAAATTTCAGATCTCGAGTCAAATTTAAAACATTGAATGGAAGGTACGGTCTTAT
73224 TCGGTGTCAAATTTAAAACTTTGAGGATTCGTGTT
456 TCGGTGTCAAATTTAAAACTTTGAGGATTCGTGTT
*
73259 TTTTTTTCTTTTCGTGTTTTAAGATATAATCCTTGACAAGTCATATCAACTAGCGTTGGCGCTAC
1 TTTTTTT-TTTTCGTGTTGTAAGATATAATCCTTGACAAGTCATATCAACTAGCGTTGGCGCTAC
73324 AAGCATTCTTTGTTTTAGAGTGGTACTTGATTAATTCATTGAATTATATAAGACTGCAGTAAAAA
65 AAGCATTCTTTGTTTTAGAGTGGTACTTGATTAATTCATTGAATTATATAAGACTGCAGTAAAAA
*
73389 TGCAATTTAAATGGATTAGTTTTAAGGCTTAATACCCAAATTAGCCCTTTAACTATCCATTTTGG
130 TGCAATTTAAATGGATTAGTTTTAAGGCTTAATACCCAAATTAGCCCCTTAACTATCCATTTTGG
*
73454 GACAAGTTGGCCCCTTTACTTGTTTTAGGACAAATTAATCCCATAACTTTAAAAAGTGAGACAAC
195 GACAAGTTGGCCCCTTTACTTGTTTTAGGACAAATAAATCCCATAACTTTAAAAAGTGAGACAAC
*
73519 TTAGCCCTTTTCTTACGAACTGTTTAACGTCCGGAAGGTGAGGACGCATCCGACCTT-CGATTAA
260 TTAGCCCTTTTCTTACGAACTGTTTAACGTCCGGAAGGTAAGGACGCATCCGA-CTTCCGATTAA
*
73583 GACGATTCTAGCGGAGTTTGAAAGATCTCGACGAGTAGAATCAGATGGTCATGGAGGTGAGAAAA
324 GACGATTCTAGCGGAGTTTGAAAGATCTCGACGAGAAGAATCAGATGGTCATGGAGGTGAGAAAA
* * * *
73648 TCATACAATTGGAAAATTTCAGATCTCGAGTCAAATTTAAAACATTGAATGGAATGTACGGTTTT
389 TCAAACAATCGGAAAATTTCAGATCTCGAGTCAAATTTAAAACATTGAATGGAAGGTACGGTCTT
73713 ATTCGGTGTC
454 ATTCGGTGTC
73723 GGAATAGGTT
Statistics
Matches: 442, Mismatches: 20, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
490 7 0.02
491 432 0.98
492 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (490 bp):
TTTTTTTTTTTCGTGTTGTAAGATATAATCCTTGACAAGTCATATCAACTAGCGTTGGCGCTACA
AGCATTCTTTGTTTTAGAGTGGTACTTGATTAATTCATTGAATTATATAAGACTGCAGTAAAAAT
GCAATTTAAATGGATTAGTTTTAAGGCTTAATACCCAAATTAGCCCCTTAACTATCCATTTTGGG
ACAAGTTGGCCCCTTTACTTGTTTTAGGACAAATAAATCCCATAACTTTAAAAAGTGAGACAACT
TAGCCCTTTTCTTACGAACTGTTTAACGTCCGGAAGGTAAGGACGCATCCGACTTCCGATTAAGA
CGATTCTAGCGGAGTTTGAAAGATCTCGACGAGAAGAATCAGATGGTCATGGAGGTGAGAAAATC
AAACAATCGGAAAATTTCAGATCTCGAGTCAAATTTAAAACATTGAATGGAAGGTACGGTCTTAT
TCGGTGTCAAATTTAAAACTTTGAGGATTCGTGTT
Found at i:77546 original size:281 final size:281
Alignment explanation
Indices: 77043--77605 Score: 1045
Period size: 281 Copynumber: 2.0 Consensus size: 281
77033 GCCTTAACAG
* *
77043 AATATTTGGCCCAAAATGACATCACTCAGAGAAGCTCATGCCCGCACACCCCAGAACAAAATGGG
1 AATATTTGACCCAAAATGACATCACTCAGAGAAGCTCATGCCCGCACACCCAAGAACAAAATGGG
77108 TGTGCAGAAAGAAAACATCGTCATGTTGTAGAAACTGGGCTTGCATTATTAAACCATGCCAATGT
66 TGTGCAGAAAGAAAACATCGTCATGTTGTAGAAACTGGGCTTGCATTATTAAACCATGCCAATGT
77173 CCCATTAAAATACTGGACCTATGCCTTTGATGCCGCAGTCTACATAATAAATAGACTACCGACAC
131 CCCATTAAAATACTGGACCTATGCCTTTGATGCCGCAGTCTACATAATAAATAGACTACCGACAC
77238 CAAAACTCAAACACAAAAGCCTATTTGAGACAATTTTCCATGAGAAACCAAATACGAAACGCTTC
196 CAAAACTCAAACACAAAAGCCTATTTGAGACAATTTTCCATGAGAAACCAAATACGAAACGCTTC
*
77303 GAACCTTTGACAGTCTTTGCT
261 GAACCTTTGACAGTCTCTGCT
*
77324 AATATTTGACCCAAAATGACATCACTCAGAGAAGCTCATTCCCGCACACCCAAGAACAAAATGGG
1 AATATTTGACCCAAAATGACATCACTCAGAGAAGCTCATGCCCGCACACCCAAGAACAAAATGGG
* *
77389 TGTGTAGAAAGAAAACATTGTCATGTTGTAGAAACTGGGCTTGCATTATTAAACCATGCCAATGT
66 TGTGCAGAAAGAAAACATCGTCATGTTGTAGAAACTGGGCTTGCATTATTAAACCATGCCAATGT
77454 CCCATTAAAATACTGGACCTATGCCTTTGATGCCGCAGTCTACATAATAAATAGACTACCGACAC
131 CCCATTAAAATACTGGACCTATGCCTTTGATGCCGCAGTCTACATAATAAATAGACTACCGACAC
* *
77519 TAAAACTCAAACACAAAAGGCTATTTGAGACAATTTTCCATGAGAAACCAAATACGAAACGCTTC
196 CAAAACTCAAACACAAAAGCCTATTTGAGACAATTTTCCATGAGAAACCAAATACGAAACGCTTC
*
77584 GAACCTTTGGCAGTCTCTGCT
261 GAACCTTTGACAGTCTCTGCT
77605 A
1 A
77606 TCCTTGGCTC
Statistics
Matches: 273, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
281 273 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (281 bp):
AATATTTGACCCAAAATGACATCACTCAGAGAAGCTCATGCCCGCACACCCAAGAACAAAATGGG
TGTGCAGAAAGAAAACATCGTCATGTTGTAGAAACTGGGCTTGCATTATTAAACCATGCCAATGT
CCCATTAAAATACTGGACCTATGCCTTTGATGCCGCAGTCTACATAATAAATAGACTACCGACAC
CAAAACTCAAACACAAAAGCCTATTTGAGACAATTTTCCATGAGAAACCAAATACGAAACGCTTC
GAACCTTTGACAGTCTCTGCT
Found at i:79163 original size:31 final size:31
Alignment explanation
Indices: 79105--79163 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
79095 TTGGACGAAA
* * * *
79105 TAAAAGGTTTGATACTAAGTTGTGATTTTCT
1 TAAAAGATTTGATACCAAATTGAGATTTTCT
*
79136 TAAAAGATTTGGTACCAAATTGAGATTT
1 TAAAAGATTTGATACCAAATTGAGATTT
79164 CAGCCTTTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.41
Consensus pattern (31 bp):
TAAAAGATTTGATACCAAATTGAGATTTTCT
Found at i:79474 original size:23 final size:23
Alignment explanation
Indices: 79447--79492 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
79437 CATAGCCAAA
*
79447 GCACCCAAATAGGCCATATGTTT
1 GCACCCAAATAAGCCATATGTTT
79470 GCACCCAAATAAGCCATATGTTT
1 GCACCCAAATAAGCCATATGTTT
79493 ATCATGGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (23 bp):
GCACCCAAATAAGCCATATGTTT
Found at i:79642 original size:12 final size:12
Alignment explanation
Indices: 79625--79650 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79615 ACCCTTCTTT
79625 AATCTTGGAATA
1 AATCTTGGAATA
79637 AATCTTGGAATA
1 AATCTTGGAATA
79649 AA
1 AA
79651 GCCTCAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (12 bp):
AATCTTGGAATA
Found at i:80224 original size:21 final size:21
Alignment explanation
Indices: 80198--80240 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
80188 CATCAATGGA
*
80198 CAAGCTCCCTTAGGTACTTCT
1 CAAGCTCCCTCAGGTACTTCT
*
80219 CAAGCTCCCTCATGTACTTCT
1 CAAGCTCCCTCAGGTACTTCT
80240 C
1 C
80241 TGAATCATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.37, G:0.12, T:0.33
Consensus pattern (21 bp):
CAAGCTCCCTCAGGTACTTCT
Found at i:81873 original size:157 final size:156
Alignment explanation
Indices: 81602--81902 Score: 444
Period size: 157 Copynumber: 1.9 Consensus size: 156
81592 TGTTAGACCC
* *
81602 GAATTTGAACTGTTTTAATTAGGTCAAATCATGTTCAAAACCCAATTCAATTGTGAAAAGCAAAA
1 GAATTTGAACTGGTTTAATTAGGTCAAATCATGTTCAAAACCCAATTCAATTATGAAAAGCAAAA
* * * *
81667 CACTAGTTGTATCTCTCTAATTAGGTTGAGTAATTCAAGCCTAAGGCCCAATGCAAATTTGATCC
66 CACTAGTTGTACCTCTCTAATTAGGTTGAGTAATTCAAACCCAAGGCCCAATGCAAATTTGAACC
*
81732 CAAATTCAACAAAGCCCAATTAAACT
131 AAAATTCAACAAAGCCCAATTAAACT
* * *
81758 GAATTTGAACTAGGTTTAATTAGGTCAAATCATGTTCAAACCCCAATTCAATTATGAAAGGTAAA
1 GAATTTGAACT-GGTTTAATTAGGTCAAATCATGTTCAAAACCCAATTCAATTATGAAAAGCAAA
* * *
81823 AGACTAGTTAG-ACCTCTCTAATT-GAGTTGAGTAATTCAAACCCAATGCCCAATGTAAATTTGA
65 ACACTAGTT-GTACCTCTCTAATTAG-GTTGAGTAATTCAAACCCAAGGCCCAATGCAAATTTGA
81886 ACCAAAATTCAACAAAG
128 ACCAAAATTCAACAAAG
81903 AAAACTAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
156 12 0.09
157 116 0.90
158 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (156 bp):
GAATTTGAACTGGTTTAATTAGGTCAAATCATGTTCAAAACCCAATTCAATTATGAAAAGCAAAA
CACTAGTTGTACCTCTCTAATTAGGTTGAGTAATTCAAACCCAAGGCCCAATGCAAATTTGAACC
AAAATTCAACAAAGCCCAATTAAACT
Done.