Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013752.1 Corchorus capsularis cultivar CVL-1 contig13773, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48677

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
720--756
12
2.8
13
92
8
58
2
24
0
72
0.97
2271--2332
13
4.6
13
76
20
56
50
0
0
50
1.00
2278--2336
24
2.6
22
78
21
61
54
0
0
45
0.99
9566--9592
2
13.5
2
100
0
54
51
0
0
48
1.00
11515--11569
15
3.5
15
70
29
51
32
29
3
34
1.75
11513--11585
33
2.2
33
100
0
146
35
27
2
34
1.71
11530--11585
18
3.3
18
68
31
59
35
28
1
33
1.68
15413--15518
54
2.0
54
86
3
151
44
21
11
22
1.84
15562--15606
19
2.3
19
80
7
54
42
20
8
28
1.82
19534--19614
41
2.0
41
87
4
119
46
14
0
38
1.45
19537--19585
25
1.9
26
83
4
64
44
18
0
36
1.50
19920--19946
14
1.9
14
100
0
54
88
0
0
11
0.50
22447--22538
32
2.9
32
95
0
157
27
23
16
32
1.96
27934--27981
24
2.0
24
84
8
62
68
4
10
16
1.33
30093--30243
72
2.1
72
84
7
191
25
7
24
42
1.81
33309--33369
29
2.1
29
90
0
95
36
21
26
16
1.94
36664--36688
2
12.5
2
100
0
50
48
0
0
52
1.00
36745--36769
2
12.5
2
100
0
50
48
0
0
52
1.00
41207--41240
11
3.2
10
84
15
50
50
17
2
29
1.61

Tables:   1

The End!